Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0454 + 18364654-18366594                                         29   3.0  
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219     27   6.9  

>07_03_0454 + 18364654-18366594
          Length = 646

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 270 IK*STKIWNEIYNIVWKQLNV*HNIQYW 187
           IK S  + ++  NIVW +LNV   I++W
Sbjct: 379 IKMSISVLDQWKNIVWNELNVQSRIKHW 406


>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
          Length = 215

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 401 LINTVLIKETSKPHICLLKKIIRSKLF*KKLIFHKSLLCGIKYR*NNLLKY 249
           LI+ V  K+ S P    L++++R +   K+  FH ++  G K    NLLKY
Sbjct: 81  LIDLVETKDNS-PSSARLEELLRKENCRKETAFHDAVCIGNKDIITNLLKY 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,870
Number of Sequences: 37544
Number of extensions: 152181
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)