Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                   27   7.1  
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 378

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 235 VNFVPYFSRLFYLYLIPQSKDL*NISFF 318
           V+F+PYF  L  +YL P  +++ ++  F
Sbjct: 301 VSFIPYFIALNIIYLYPHGENIVSLQVF 328


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -3

Query: 225 WKQLNV*HNIQYWPFTTVFFSILNIK*VSTKNYYNKKINDHWFFTELSLASTRLGPEFST 46
           W+Q+N    +Q+   T  FF+++ I      ++Y K    H+    +SL    L P+F  
Sbjct: 318 WEQIN--QGVQFTQ-TRKFFTLIPIFLFMITSFYTKYDGIHFIINAVSLLLLSLVPKFPQ 374

Query: 45  KHCFN 31
            + F+
Sbjct: 375 MYKFS 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,701,535
Number of Sequences: 59808
Number of extensions: 199750
Number of successful extensions: 325
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)