Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 277 NIDKIIY*NMERNLQHCLEAIKCVTQYTILAFYNSLF 167
           NI K++  N+E   QH  E I  +  +   + YN  F
Sbjct: 442 NISKVVQWNVEEVFQHSAEVIVALDDFVYASHYNDSF 478


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 143 TYLMFKIEKKTVVKGQYCILCYTFNCF-QTML*ISFHILVDYFIY--I*FRKVRTY 301
           T LM + +  T+V  QY +L    +CF  T+   + H +  YF    + FRKV+ +
Sbjct: 74  TVLMRRSDSDTIVNLQYVLLILLCSCFGVTITFFAIHFVFRYFALERLVFRKVKHF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,229
Number of Sequences: 27780
Number of extensions: 177668
Number of successful extensions: 347
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)