Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    29   0.56 
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.2  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   3.9  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   6.8  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   6.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 482 YVQHSQMLWISHRKFQDNHV 423
           +V+H++++W+  RK  D HV
Sbjct: 522 FVEHNKLMWLKDRKMGDGHV 541


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 KSGSTDDPSNYRPISVLPTLSKIFEKIILTQL 301
           K+GS DD S +R       L ++ EK+IL +L
Sbjct: 540 KNGSIDDFSVWRSAFANDALDRLLEKVILPKL 571


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 167 PDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKII 289
           PDL  +     +F      + + Y PI+VLP+LS++ +  I
Sbjct: 344 PDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAI 384


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 395 KNIFKSWEESHDCLGIFCDLSKAFD 469
           KN + SW+ES +C+  +      FD
Sbjct: 82  KNTYGSWDESLECINQYMQEKGPFD 106


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 179 KHSKVIPLFKSGS--TDDPSNYRPISVLPTLSKIFEKIILTQLL 304
           K S V  L+++    T  P  Y     +PT  KIF  +I TQLL
Sbjct: 71  KESGVSILYEANEDITQIPKVYGLCRFIPTEEKIFLDLIATQLL 114


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 495 LTNVLCSTQSNALDKSQKIPRQSCDSSQDLKIFLTR*APASV 370
           L  +LC + +NA+D          D+S +L   LTR  P ++
Sbjct: 707 LIRLLCYSSNNAIDPVSAPGNLDFDNSAELCSSLTRFTPKNI 748


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 245  ISVLPTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEES 424
            IS  P  SK    +   + L+   +  L+    FGFT+  ST     +     ++    +
Sbjct: 1756 ISRNPNTSKTAVHVFSREKLDLVITPQLIETLHFGFTKVISTPFPIEFKCDAPYRIHNYT 1815

Query: 425  HDCLGIFCDLSKAFD-CVEH 481
               + ++ D   A D CV H
Sbjct: 1816 GHAVSVWADFENAADSCVRH 1835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,445
Number of Sequences: 5004
Number of extensions: 38593
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)