Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 49 2e-06
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 46 2e-05
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 45 4e-05
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 31 0.56
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 1.7
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 29 2.3
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 29 2.3
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 24 6.0
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 27 6.9
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857... 27 6.9
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 27 6.9
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 24 7.8
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 27 9.1
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/115 (23%), Positives = 58/115 (50%)
Frame = +2
Query: 170 DLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHNKQFG 349
+++ S + + K S + +++RPIS++ KI K++ +L L+ + +G
Sbjct: 366 EILNSSFITLVPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYG 423
Query: 350 FTRGRSTTDAGAYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHKTLVRKLHHYG 514
F +G++ D A+ + I + + + + + D KAFD +EH ++ + H G
Sbjct: 424 FIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMG 478
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Frame = +2
Query: 158 GVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHN 337
G+ P+ + + ++ + K D +YRPIS+ + K+ K ++ +L ++L+
Sbjct: 941 GLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPIL--DDLVSK 998
Query: 338 KQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIFC----DLSKAFDCVEHKTLVRKLH 505
+Q F +GR TD A L F S +++ C DLSKA+D V+ + L L+
Sbjct: 999 EQSAFIQGRMITD-NALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALN 1057
Query: 506 HYG 514
G
Sbjct: 1058 KLG 1060
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/104 (27%), Positives = 49/104 (47%)
Frame = +2
Query: 191 VIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRST 370
++ + K G + YRPIS+ KI K++ T+L F ++H Q GF +GR
Sbjct: 973 IVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFL--RMIHLDQTGFLKGRCI 1030
Query: 371 TDAGAYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHKTLVRKL 502
++ Y + I + + + D +KAFD V +L + L
Sbjct: 1031 SENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKIL 1074
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 356 RGRSTTDAGAYLVKNIFKSWEESHDCL-GIFCDLSKAFDCVEHKTLVRKL 502
+G A + F+ + DC+ ++CD+ +FD V HK V KL
Sbjct: 371 KGEGVKGAAKKVCSKCFEKGHVADDCVVEVYCDICDSFDHVSHKCPVLKL 420
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 188 KVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIIL----TQLLEHFNSNNLLHNKQFGFT 355
K+I K + DP+N P S+L + + + T + EH NS+ L KQ
Sbjct: 525 KIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEW 584
Query: 356 RGRSTTDAGAYLVKNIFKSWEESHDCLGIFCDLS 457
+ T +G ++ F S +E +G+F LS
Sbjct: 585 WRQMTKASGERMID--FTSLDER--AMGMFWVLS 614
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 326 LLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIFCDLSKAFDCVEHKTLVRKL 502
++H Q GF +GR ++ Y + I L I D +KAFD V ++L + L
Sbjct: 1 MIHMDQTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQIL 59
>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 194 IPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNN 325
+ +F S DPS Y +++ L+ E ++EHFN+ N
Sbjct: 984 LKVFYGNSAGDPSTYSLVTIFDKLASSPEYQQRAAMVEHFNAGN 1027
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 236 YRPISVLPTLSKIFEKII 289
Y PI+VLP+LS++ + I
Sbjct: 376 YPPINVLPSLSRLMKSAI 393
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 305 EHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIF 445
E +S +LL+ +F R GAY +NIF+S + + L IF
Sbjct: 429 EALSSEDLLY-LEFLDKFERKFVTQGAYDTRNIFQSLDLAWSLLRIF 474
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 440 IFCDLSKAFDCVEHKTLVRKL 502
+ D+SKAFDCV H +++ +
Sbjct: 293 VVADVSKAFDCVSHDMVLKMI 313
>11_05_0068 -
18782658-18782984,18784634-18784783,18784853-18785716,
18785877-18786005,18786112-18786188,18786507-18786607,
18786772-18786896
Length = 590
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 290 LTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKN 400
L L +H NL K GF+ GRS+ + Y V+N
Sbjct: 499 LRSLEKHCPHKNLKLVKMTGFSAGRSSLELALYFVEN 535
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 332 HNKQFGFTRGRSTTDAGAYLVKNIFKSWE 418
H K G R TTDA A L ++ +W+
Sbjct: 158 HKKDAGLERDGCTTDAAAVLFASVTSAWD 186
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 23.8 bits (49), Expect(2) = 7.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2
Query: 236 YRPISVLPTLSKIFEKII 289
Y PI+VLP+LS++ + I
Sbjct: 406 YPPINVLPSLSRLMKSAI 423
Score = 21.8 bits (44), Expect(2) = 7.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 305 EHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIF 445
E +S +LL+ +F R GAY +NIF+S + + L IF
Sbjct: 459 EALSSEDLLY-LEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIF 504
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 437 GIFCDLSKAFDCVEHKTLVRKLH 505
G F ++ KAFD VE+K + KLH
Sbjct: 462 GGFSEVYKAFDLVEYKYVACKLH 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,403
Number of Sequences: 37544
Number of extensions: 207022
Number of successful extensions: 457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -