Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 71 7e-13
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 71 7e-13
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 71 7e-13
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 45 4e-05
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 31 0.66
Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 30 1.2
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 28 3.5
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 28 3.5
Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL110485-17|CAB60365.1| 272|Caenorhabditis elegans Hypothetical... 28 4.7
AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical... 28 4.7
Z70203-5|CAA94108.3| 429|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical pr... 27 8.1
U64862-1|AAM69079.2| 593|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical ... 27 8.1
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 70.5 bits (165), Expect = 7e-13
Identities = 47/146 (32%), Positives = 67/146 (45%)
Frame = +2
Query: 77 ISVKVLKSVIDIIAPHLASIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 256
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 399 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 458
Query: 257 PTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCL 436
P L K+F K +L ++ + + +Q GF R ST D L + + E
Sbjct: 459 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 516
Query: 437 GIFCDLSKAFDCVEHKTLVRKLHHYG 514
+F D KAFD VEH+ + + L G
Sbjct: 517 LVFIDFKKAFDTVEHQAIWKSLDEQG 542
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 70.5 bits (165), Expect = 7e-13
Identities = 47/146 (32%), Positives = 67/146 (45%)
Frame = +2
Query: 77 ISVKVLKSVIDIIAPHLASIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 256
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 570 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 629
Query: 257 PTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCL 436
P L K+F K +L ++ + + +Q GF R ST D L + + E
Sbjct: 630 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 687
Query: 437 GIFCDLSKAFDCVEHKTLVRKLHHYG 514
+F D KAFD VEH+ + + L G
Sbjct: 688 LVFIDFKKAFDSVEHQAIWKSLDEQG 713
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 70.5 bits (165), Expect = 7e-13
Identities = 47/146 (32%), Positives = 67/146 (45%)
Frame = +2
Query: 77 ISVKVLKSVIDIIAPHLASIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVL 256
IS LKS D + + FN + P K SK +FK G ++ NYRPI +L
Sbjct: 309 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 368
Query: 257 PTLSKIFEKIILTQLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCL 436
P L K+F K +L ++ + + +Q GF R ST D L + + E
Sbjct: 369 PVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLT 426
Query: 437 GIFCDLSKAFDCVEHKTLVRKLHHYG 514
+F D KAFD VEH+ + + L G
Sbjct: 427 LVFIDFKKAFDSVEHQAIWKSLDEQG 452
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 44.8 bits (101), Expect = 4e-05
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +2
Query: 125 LASIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDP---SNYRPISVLPTLSKIFEKIILT 295
LA ++N + + PD K + VI + K DP S+YRPIS+L ++K+ EK IL
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKK--DPAIASSYRPISLLSPIAKLLEKAILK 424
Query: 296 QLLEHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHD---CLGIFCDLSKAF 466
++ S H Q GF STT A + +I + + DL AF
Sbjct: 425 RIKNSIESP--AH--QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAF 480
Query: 467 DCVEHKTLVRKL 502
D V K L L
Sbjct: 481 DKVPTKKLCNDL 492
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 395 KNIFKSWEESHDCLGIFCDLSKAFDCVEHKTLVRKLHHYG 514
K+ KS + +F D KAFD VEH+ + + L G
Sbjct: 25 KDFLKSAGNTRSLTLVFIDFKKAFDSVEHQAIWKSLDEQG 64
>Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical
protein F52B11.1b protein.
Length = 389
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 426 CDSSQDLKIFLTR*APASVVERPLVNPNCLL*SRLFELKCSKSCVK 289
C + K ++ R A R +NPNC+ SR+ CS C K
Sbjct: 19 CGNVSQRKDYIMRKAEPDKHPRQCLNPNCIYESRIDSKYCSDECGK 64
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 458 KAFDCVEHKTLVRKLHHYGI 517
KAFD V H L++KLH +GI
Sbjct: 2 KAFDQVNHSLLLQKLHDFGI 21
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 419 ESHDCLGIFCDLSKAFDCVEHKTLVRKLHHYGI 517
E+HDC DCV H TL + H G+
Sbjct: 236 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 268
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 419 ESHDCLGIFCDLSKAFDCVEHKTLVRKLHHYGI 517
E+HDC DCV H TL + H G+
Sbjct: 262 ETHDCPVCKSQFMTRMDCVSHHTLEHENHREGL 294
>Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical
protein F52B11.1a protein.
Length = 508
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 471 QSNALDKSQKIP-RQSCDSSQDLKIFLTR*-APASVVERPLVNPNCLL*SRLFELKCSKS 298
++N +++ +P R + S DL+ T+ A R +NPNC+ SR+ CS
Sbjct: 121 KANIINERDYVPNRPTRQQSADLRRKRTQLNAEPDKHPRQCLNPNCIYESRIDSKYCSDE 180
Query: 297 CVK 289
C K
Sbjct: 181 CGK 183
>AL110485-17|CAB60365.1| 272|Caenorhabditis elegans Hypothetical
protein Y46G5A.22b protein.
Length = 272
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 268 TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTIIKNTSKMRSNNVYYRL 95
T RR + +S RG +S+ TRF + RK + T T + + NN YY +
Sbjct: 5 TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63
Query: 94 QNLY 83
++Y
Sbjct: 64 DDIY 67
>AL110485-16|CAB60364.1| 295|Caenorhabditis elegans Hypothetical
protein Y46G5A.22a protein.
Length = 295
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 268 TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTIIKNTSKMRSNNVYYRL 95
T RR + +S RG +S+ TRF + RK + T T + + NN YY +
Sbjct: 5 TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63
Query: 94 QNLY 83
++Y
Sbjct: 64 DDIY 67
>Z70203-5|CAA94108.3| 429|Caenorhabditis elegans Hypothetical
protein C05G5.5 protein.
Length = 429
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 287 ILTQLLEHFNSNNLLHNKQ 343
+LT+LL +F NNL HN Q
Sbjct: 18 VLTRLLVYFLQNNLAHNSQ 36
>Z82055-5|CAB04847.1| 229|Caenorhabditis elegans Hypothetical
protein T26H2.5 protein.
Length = 229
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 179 KHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILT 295
K S +IPL+ S +T ++ +V T K FEK +++
Sbjct: 27 KSSSIIPLYLSSNTSHSASSYTRTVYVTFHKTFEKKVVS 65
>U64862-1|AAM69079.2| 593|Caenorhabditis elegans Hypothetical
protein ZC8.6 protein.
Length = 593
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 353 TRGRSTTDAGAYLVKNIFKSWEESHD 430
T G ST+DAGA KSW+E+++
Sbjct: 555 TAGPSTSDAGAASSTGGSKSWQETYE 580
>AL132904-4|CAC35836.2| 582|Caenorhabditis elegans Hypothetical
protein Y111B2A.8 protein.
Length = 582
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 444 KIPRQSCDSSQDLKIFLTR*APASVVERPLVNPN 343
++PR+ +S L++ P+ VV+ PL +PN
Sbjct: 156 RVPRKHANSMSSLRVSPGAIGPSGVVKAPLSDPN 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,732,169
Number of Sequences: 27780
Number of extensions: 211978
Number of successful extensions: 529
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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