Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi...    30   0.82 
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    30   1.1  
At1g44414.1 68414.m05112 hypothetical protein                          29   1.4  
At1g26680.1 68414.m03250 transcriptional factor B3 family protei...    28   3.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    27   7.7  
At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati...    24   8.5  
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati...    24   8.5  

>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 134 IFNDCIRCGVFPDLMKHSKVI-PLFKSGSTDD 226
           I+N+ ++CG+ PDL+ ++ VI  L +SG+  +
Sbjct: 270 IYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKE 301


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/62 (25%), Positives = 38/62 (61%)
 Frame = +2

Query: 80  SVKVLKSVIDIIAPHLASIFNDCIRCGVFPDLMKHSKVIPLFKSGSTDDPSNYRPISVLP 259
           S++V+ ++I++ +  + +I +DC R   FPD+    + + + K+G  + P+++R  + + 
Sbjct: 684 SLEVIPTLINLASLKIINI-HDCPRLKSFPDVPTSLEELVIEKTGVQELPASFRHCTGVT 742

Query: 260 TL 265
           TL
Sbjct: 743 TL 744


>At1g44414.1 68414.m05112 hypothetical protein
          Length = 101

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 146 CIRCGVFPDLMKHSKVIPLF 205
           CIRCG   DL+++ KVI LF
Sbjct: 24  CIRCGSQADLVEYDKVIKLF 43


>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 920

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -3

Query: 492 TNVLCSTQSNALDKSQKIPRQSCDSSQDLKIFLTR*APASVVERPLVNPNCLL*SRLFEL 313
           TN+  S++   + K+   PR+  +SS D   F+    P+S+ +  L  P   + S   + 
Sbjct: 409 TNIGNSSRKKRVSKN---PREKVESSSDHSSFVGSVNPSSLYKDQLYLPRNFVSSNFLDK 465

Query: 312 KCSKSCVK 289
           +CS+  +K
Sbjct: 466 RCSEIVLK 473


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|Q03468 Excision
            repair protein ERCC-6 (Cockayne syndrome protein CSB)
            {Homo sapiens}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1187

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +2

Query: 203  FKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHN-KQFGFTRGRSTTDA 379
            ++ G   D + YR I    T   I EK+   Q+ +HF +N +L N +Q  F + R   D 
Sbjct: 837  WRIGQKKDVTVYRLI----TRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKD- 891

Query: 380  GAYLVKNIFKSWEESHDCLGIFCDLSKAFDCV 475
              +++K+   S   S +   IF  L++  + V
Sbjct: 892  -LFILKDDGDS-NASTETSNIFSQLAEEINIV 921


>At2g02960.5 68415.m00248 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 275

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 173 LMKHSKVIPLFKSGSTDDPSNYRPISVLPTLSKIFEKIILTQLLEHFNSNNLLHN 337
           L++H+  I     G  DDPS+   +S L  L   F    L+QL  H + N    N
Sbjct: 169 LLRHALTITDDTDGEEDDPSSILSVSSLKLLPFFFFFYFLSQL--HLSCNTKPQN 221


>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 23.8 bits (49), Expect(2) = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 236 YRPISVLPTLSKIFEKII 289
           Y PI+VLP+LS++ +  I
Sbjct: 366 YPPINVLPSLSRLMKSAI 383



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 305 EHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIF 445
           E  +S +LL+  +F     R     GAY  +NIF+S + +   L IF
Sbjct: 419 EALSSEDLLY-LEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIF 464


>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
           / V-ATPase B subunit, putative / vacuolar proton pump B
           subunit, putative / V-ATPase 57 kDa subunit, putative
           very strong similarity to SP|P11574 Vacuolar ATP
           synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
           (Vacuolar proton pump B subunit) (V-ATPase 57 kDa
           subunit) {Arabidopsis thaliana}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain
          Length = 487

 Score = 23.8 bits (49), Expect(2) = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 236 YRPISVLPTLSKIFEKII 289
           Y PI+VLP+LS++ +  I
Sbjct: 366 YPPINVLPSLSRLMKSAI 383



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 305 EHFNSNNLLHNKQFGFTRGRSTTDAGAYLVKNIFKSWEESHDCLGIF 445
           E  +S +LL+  +F     R     GAY  +NIF+S + +   L IF
Sbjct: 419 EALSSEDLLY-LEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIF 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,866,838
Number of Sequences: 28952
Number of extensions: 189351
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)