Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H04f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 1e-36
SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18) 42 3e-04
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 40 0.001
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 38 0.007
SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12) 37 0.009
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 37 0.009
SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_8927| Best HMM Match : UCH (HMM E-Value=0) 36 0.015
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022) 35 0.035
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.082
SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06) 34 0.082
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06) 32 0.33
SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07) 31 0.76
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06) 30 1.0
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 1.8
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12) 27 7.1
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 149 bits (361), Expect = 1e-36
Identities = 77/144 (53%), Positives = 99/144 (68%)
Frame = +2
Query: 77 SVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDTWGNFKLT 256
SV VKWGKE + VE+NTD+ P +FKAQ+FAL+ V PERQKV+ KG L+ T
Sbjct: 8 SVNVKWGKEKFGGVELNTDEPPQVFKAQLFALSSVPPERQKVMLKGAVLQGVT------- 60
Query: 257 NNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 436
+++MGS D+P APV +T F+EDM+EA+LA+A +P GL NLGNTCYMNATVQCL
Sbjct: 61 ----LMMMGSVG-DIPTAPVRKTVFMEDMSEAQLASAFKLPAGLNNLGNTCYMNATVQCL 115
Query: 437 KTVPELRNALLNYDKSSTGGDTAG 508
+ VPEL ++L NY + G G
Sbjct: 116 RNVPELHDSLTNYSGNLGFGSDIG 139
>SB_16315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGD 499
GLINLGNTC+MN VQ L P LR+ L+ D+ + GD
Sbjct: 40 GLINLGNTCFMNCIVQALTHTPLLRDYFLS-DQHNCKGD 77
>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
Length = 457
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGE 511
GL+N TCY+N+ +Q L PE RNA+ N + GG G+
Sbjct: 208 GLVNQAMTCYLNSLLQTLYMTPEFRNAIYNQLSENGGGGGLGQ 250
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELR 457
GL NLGNTCYMN+ +Q L T+PE +
Sbjct: 216 GLRNLGNTCYMNSVLQVLMTLPEFK 240
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALL 469
GL N G TCYMN+ +Q L +PELR +L
Sbjct: 1257 GLKNAGATCYMNSVIQQLFMIPELRKGVL 1285
>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
Length = 893
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCL-KTVP 448
GL NLGNTCYMN+ +QCL T P
Sbjct: 697 GLRNLGNTCYMNSVLQCLFNTAP 719
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTV-PELRNALLNYDKSS 487
GL NLGNTC+MNA +QCL + P R L Y+ S
Sbjct: 465 GLENLGNTCFMNAGLQCLFVIKPFQRFFLSEYEPPS 500
>SB_43026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 368 MDMPEGLINLGNTCYMNATVQCLKTVPELRNALLNYDK 481
+ + GL NLGNTCY+NAT+Q L + + NY K
Sbjct: 52 LGLVRGLKNLGNTCYLNATLQMLARDSVIDKLIGNYVK 89
>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLN 472
GL NLGNTC+MN+ +QCL L L+
Sbjct: 223 GLANLGNTCFMNSGLQCLSNTMTLTKYFLS 252
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.015
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPEL 454
GL+NLGNTCYMN+ +Q L + +L
Sbjct: 404 GLVNLGNTCYMNSVLQSLYMLEDL 427
>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
Length = 316
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDT 502
GL+N GNTCY N+ +Q L R+ +L+Y S +T
Sbjct: 24 GLVNFGNTCYCNSVLQALFFCRPFRDKVLSYKPPSKRKET 63
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 35.9 bits (79), Expect = 0.020
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLN 472
G+INLG TCYM + +Q L +P+ R ++LN
Sbjct: 1123 GIINLGATCYMASCIQQLFLMPQARCSILN 1152
>SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022)
Length = 340
Score = 35.1 bits (77), Expect = 0.035
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCL 436
GL+N+GNTCYMNA +Q L
Sbjct: 124 GLMNIGNTCYMNAALQAL 141
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 33.9 bits (74), Expect = 0.082
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 374 MPEGLINLGNTCYMNATVQCLKTVPELRNAL 466
M GL NLGNTC++N+ VQ L L N L
Sbjct: 114 MGPGLSNLGNTCFLNSVVQVLTYTAPLVNYL 144
>SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06)
Length = 543
Score = 33.9 bits (74), Expect = 0.082
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDK 481
GL N G TCY+N+ +Q L PE +L +K
Sbjct: 43 GLQNQGGTCYLNSLIQTLFLTPEFTENILKLEK 75
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDT 502
GL N G TCYMN+ +Q L P +R +L D+ D+
Sbjct: 6 GLKNAGATCYMNSVLQQLYMQPGIREYVLGLDEDYVEKDS 45
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 32.3 bits (70), Expect = 0.25
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCL 436
GL N GNTC++NA +QCL
Sbjct: 1950 GLKNHGNTCFINAIIQCL 1967
>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
Length = 781
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 392 NLGNTCYMNATVQCLKTVPELRNALLN 472
NLGNTCYMNA +Q L + L N
Sbjct: 608 NLGNTCYMNAILQSLLGIEPFAQDLAN 634
>SB_40593| Best HMM Match : UCH (HMM E-Value=1.4e-07)
Length = 711
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSST 490
GL N N CY NA +Q L+ P + + + DK T
Sbjct: 67 GLKNRSNLCYANAVIQVLRNCPGFVDFVGDLDKQMT 102
>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
Length = 362
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 329 FVEDMNEAELATAMDMPEGLINLGNTCYMNATVQ 430
FV+ +N + P G N+GNTC+ +A +Q
Sbjct: 219 FVDPVNPYDRKRVEGTPVGFKNVGNTCWFSAVIQ 252
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 401 NTCYMNATVQCLKTVPELRNALLNYDKSSTGGDT 502
N+C + T K + ++ +DKSSTGG+T
Sbjct: 39 NSCDSSDTATAAKVLLSFNQEIVRHDKSSTGGNT 72
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELR 457
GL N G TCYMN+ +Q L P +R
Sbjct: 6 GLKNAGATCYMNSVLQQLYMQPGIR 30
>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNAL 466
GL N G TCYMN+ +Q L LR A+
Sbjct: 282 GLKNQGATCYMNSLLQTLYFTCALRKAV 309
>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 333 TKRVCSTGAAGTSSSLLPMTSTKALFVNLKLPHV-SSRNVTPLQTTFCLSGWTPVSAN 163
T+ VC+ A TS L M + A ++ L P+V ++R+V T C + TP S++
Sbjct: 299 TRTVCAHYAPRTSHYTLRMRAVHATYITLHAPYVHTTRHVHHTTRTVC-AHCTPRSSH 355
>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1243
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 371 DMPEGLINLGNTCYMNATVQCLKTVPEL 454
++P L ++ CY+N LK VPE+
Sbjct: 158 NLPSSLADMNGLCYLNLEANELKIVPEV 185
>SB_46788| Best HMM Match : LRR_1 (HMM E-Value=9.1e-12)
Length = 139
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 371 DMPEGLINLGNTCYMNATVQCLKTVPEL 454
++P L ++ CY+N LK VPE+
Sbjct: 57 NLPSSLADMNGLCYLNLEANELKIVPEV 84
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 126 IQTMNRYCSRRRYLH*QGSSQRDKKSFAKESHYG 227
I+T+NR SR LH ++RD K F K+SH G
Sbjct: 351 IRTLNRR-SRLFKLHYINLNRRDTKPFDKKSHSG 383
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,240
Number of Sequences: 59808
Number of extensions: 364452
Number of successful extensions: 1345
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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