Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 427  HCSIHVTSVTQVDETL 380
            HC+IH T V + D+ +
Sbjct: 1686 HCTIHRTQVKETDDKI 1701


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 329 FVEDMNEAELATAMDMPEGLINLGNTCYMNATVQCL 436
           F  D+N ++L   +++P  +   G    ++ TVQ +
Sbjct: 160 FAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAM 195


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -2

Query: 196 LSLWLDPCQCKYLRLEQYRFIVCIHLHIWVHFLAPF 89
           ++LWL+P   + + +    FI+ +   + V +  PF
Sbjct: 263 MTLWLEPSSTERMIIANLNFILHLFCLLDVQWRIPF 298


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 379 WHIHGCSQFSF 347
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 379 WHIHGCSQFSF 347
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 379 WHIHGCSQFSF 347
           W IH CS F F
Sbjct: 79  WVIHPCSSFRF 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 312  GAAGTSSSLLPMTSTKAL 259
            G + TSS + PM+  K+L
Sbjct: 1821 GTSSTSSDISPMSEQKSL 1838


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 312  GAAGTSSSLLPMTSTKAL 259
            G + TSS + PM+  K+L
Sbjct: 1817 GTSSTSSDISPMSEQKSL 1834


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,882
Number of Sequences: 438
Number of extensions: 3563
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)