Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309H04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 134 3e-32
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 133 8e-32
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 46 2e-05
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 42 2e-04
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 41 4e-04
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 40 8e-04
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 40 0.001
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 40 0.001
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 40 0.001
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 39 0.002
At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam ... 38 0.003
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 38 0.004
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 38 0.005
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 38 0.005
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 38 0.005
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 36 0.017
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 36 0.017
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 35 0.038
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 35 0.038
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 35 0.038
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 34 0.050
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 34 0.050
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 34 0.050
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 34 0.050
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 34 0.067
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 34 0.067
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 33 0.12
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 33 0.12
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 33 0.12
At5g49570.1 68418.m06135 transglutaminase-like family protein lo... 33 0.15
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 32 0.20
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 31 0.36
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 31 0.47
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 31 0.47
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 31 0.62
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 30 0.82
At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase f... 30 1.1
At3g28730.1 68416.m03587 structure-specific recognition protein ... 29 1.9
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ... 29 2.5
At5g04920.1 68418.m00519 vacuolar protein sorting 36 family prot... 29 2.5
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ... 27 5.8
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ... 27 5.8
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 134 bits (325), Expect = 3e-32
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Frame = +2
Query: 65 MPNVSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD-TWG 241
MP VSVK W K++ +E++ P +FKAQ++ LTGV PERQK++ KG L+DD W
Sbjct: 1 MPTVSVK--WQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLKDDGDWA 58
Query: 242 NFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNA 421
+ + +++MG+ +E V A P + F ED+ E LAT + GL+NLGNTCYMN+
Sbjct: 59 AIGVKDGQKLMMMGTADEIVKA-PEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNS 117
Query: 422 TVQCLKTVPELRNALLNYDKSSTGGD 499
TVQCLK+VPEL++AL NY ++ D
Sbjct: 118 TVQCLKSVPELKSALSNYSLAARSND 143
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 133 bits (321), Expect = 8e-32
Identities = 62/140 (44%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Frame = +2
Query: 74 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDDT-WGNFK 250
++V VKW K+++ +E++T P +FKAQ++ L+GV PERQK++ KG L+DD W
Sbjct: 57 LTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTLG 116
Query: 251 LTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLINLGNTCYMNATVQ 430
L N +++MG+ +E V A P + F+ED+ E + A + GL+NLGNTCYMN+T+Q
Sbjct: 117 LKNGQKLMMMGTADEIVKA-PEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQ 175
Query: 431 CLKTVPELRNALLNYDKSST 490
CL +VPEL++ L NY + T
Sbjct: 176 CLISVPELKSELSNYQSART 195
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCLKTVPELRNALLNYDKSS 487
P GL NLGNTCY+N+ +QCL P L N L + SS
Sbjct: 23 PLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSS 59
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGEL 514
GL+NLGNTC+ N+ +Q L ++ LR+ L + S GG A L
Sbjct: 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFLKENGSGVGGPLASSL 275
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 41.1 bits (92), Expect = 4e-04
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPE 451
GL+NLGNTC+MN+ +QCL PE
Sbjct: 318 GLLNLGNTCFMNSAIQCLVHTPE 340
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 40.3 bits (90), Expect = 8e-04
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 284 SKEEDVPAAPVEQTRFVEDMNEAELATAMDM-PEGLINLGNTCYMNATVQCLKTVPELRN 460
S ++ P++ +++ F ++ +++ P GL+NLGN+CY NA +QCL L +
Sbjct: 296 SSKKSQPSSSIDEMSFSYELFVKLYCDRVELQPFGLVNLGNSCYANAVLQCLAFTRPLIS 355
Query: 461 ALLNYDKSST 490
L+ S T
Sbjct: 356 YLIRGLHSKT 365
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTG 493
GL+NLGNTC+ N+ +Q L ++ +LR L D S +G
Sbjct: 203 GLVNLGNTCFFNSVMQNLLSLDQLREHFLKEDLSVSG 239
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALL-NYDK 481
GL NLGNTC+MN+++QCL P+L + L Y K
Sbjct: 31 GLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSK 64
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALL-NYDK 481
GL NLGNTC+MN+++QCL P+L + L Y K
Sbjct: 31 GLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSK 64
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPEL 454
GL NLGNTC+MN+T+QCL P +
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPI 325
>At4g06599.1 68417.m01024 ubiquitin family protein contains Pfam
domian PF00240: Ubiquitin family
Length = 340
Score = 38.3 bits (85), Expect = 0.003
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +2
Query: 74 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCK--GVTLRDDT--WG 241
+++ VKW + Y V + DD K +I LT V P+RQK++ G L DD+
Sbjct: 24 LTLTVKWNGKEYT-VRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSLLLS 82
Query: 242 NFKLTNNALVLVMGSKEEDVPAAPVEQTRFVEDMNEAELATAMDMPEGLIN 394
+ + + ++G+ E+D+ E V+D E A+D+ + +N
Sbjct: 83 SISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDF-ELGKEEAVDVKDKEVN 132
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLN 472
GL NLG+TC+MNA +Q L P LRN L+
Sbjct: 178 GLNNLGSTCFMNAVLQALVHAPPLRNFWLS 207
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPEL 454
GL NLGNTC+MN+ +QCL P +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPI 327
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPEL 454
GL NLGNTC+MN+ +QCL P +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPI 327
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 37.5 bits (83), Expect = 0.005
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPEL 454
GL NLGNTC+MN+ +QCL P +
Sbjct: 305 GLSNLGNTCFMNSALQCLAHTPPI 328
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCLKTVPELRNALL 469
P GLIN+GN+C+ N QCL P L L
Sbjct: 541 PCGLINVGNSCFANVVFQCLMFTPPLTTYFL 571
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCLKTVPELRNALL--NYDKSSTGGD 499
P GL+N GN+CY NA +Q L L LL ++ +S +G D
Sbjct: 437 PRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKD 479
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 34.7 bits (76), Expect = 0.038
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 119 EVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD-TWGNFKLTN-NALVLVMGSKE 292
+VN ++ +LFK +I + TGV +Q+++ +G L+DD + L N + L L++
Sbjct: 39 QVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVRQPA 98
Query: 293 EDVPAA 310
E P++
Sbjct: 99 ESAPSS 104
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCL 436
P GLIN GN C++NAT+Q L
Sbjct: 196 PRGLINAGNLCFLNATLQAL 215
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 34.7 bits (76), Expect = 0.038
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCL 436
P GLIN GN C++NAT+Q L
Sbjct: 196 PRGLINAGNLCFLNATLQAL 215
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTA 505
GL N G TCYMN+ +Q L +P R A+ + + TA
Sbjct: 199 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA 239
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTA 505
GL N G TCYMN+ +Q L +P R A+ + + TA
Sbjct: 200 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA 240
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 34.3 bits (75), Expect = 0.050
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 212 GVTLRDDTWGNFKLTNNALVLVMGSKEEDVPAAPV--EQTRFVEDMN--EAELATAMDMP 379
G+ R +G+ ++ AL+ G + + V FVE N ELA P
Sbjct: 113 GLRFRASPFGDSSASSIALISERGQNKSSLKPREVLFPYEEFVEYFNWDNPELA-----P 167
Query: 380 EGLINLGNTCYMNATVQCL 436
GL+N GN+C+ N +QCL
Sbjct: 168 CGLMNCGNSCFANVILQCL 186
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTA 505
GL N G TCYMN+ +Q L +P R A+ + + TA
Sbjct: 199 GLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA 239
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 33.9 bits (74), Expect = 0.067
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCL 436
GL NLGNTC++N+ +QCL
Sbjct: 108 GLQNLGNTCFLNSVLQCL 125
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 33.9 bits (74), Expect = 0.067
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCL 436
P GL NLG TCY N+ +QCL
Sbjct: 105 PAGLTNLGATCYANSILQCL 124
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGE 511
GL NLGN C++N +Q L + + R + L + G AGE
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFR-SFLQWVLEDARGSLAGE 116
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSSTGGDTAGE 511
GL NLGN C++N +Q L + + R + L + G AGE
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFR-SFLQWVLEDARGSLAGE 116
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNY 475
GL NLGN+C++N+ QC L +LL++
Sbjct: 177 GLWNLGNSCFLNSVFQCFTHTVPLIESLLSF 207
>At5g49570.1 68418.m06135 transglutaminase-like family protein low
similarity to peptide:N-glycanase PNGase [Mus musculus]
GI:8347622; contains Pfam profile PF01841:
Transglutaminase-like superfamily
Length = 721
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 113 DVEVNTDDEPVLFKAQIFALTGVQPERQKVVCK 211
DV+ NT+D + + IF+LT V PE QK+V +
Sbjct: 16 DVDYNTEDGLEVLRFLIFSLTLVPPEEQKIVAE 48
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNYDKSS 487
G N GNTCY N+ +Q L R LL Y S+
Sbjct: 24 GFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSN 58
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 74 VSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQPERQKVVCKGVTLRDD 232
+ +KVK E D+E+ D K +I G+ P Q++V G L DD
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADD 53
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 31.1 bits (67), Expect = 0.47
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 38 KGERAK*PEMPNVSVKVKWGKEMYPDVEVNTDDEPVLFKAQIFALTGVQP----ERQKVV 205
KG R P + G+ +Y D ++ DD +LF + L GV + K
Sbjct: 172 KGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPTVENLCGVSDGGGGDNGKKK 231
Query: 206 CKGVTLRDDTWGNFKLTNNALVLVMGSKE 292
K +++ D+ + +K L VMGS E
Sbjct: 232 SKLISMLDEVYKRYKQYYEQLQAVMGSFE 260
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQ 430
GL+NLGN+CY+ AT+Q
Sbjct: 309 GLVNLGNSCYLAATMQ 324
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 377 PEGLINLGNTCYMNATVQCL 436
P GL N GN+C+ N +QCL
Sbjct: 173 PCGLTNCGNSCFANVVLQCL 192
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALLNY 475
G N GNTCY N+ +Q L R LL +
Sbjct: 24 GFENFGNTCYCNSVLQALYFCAPFREQLLEH 54
>At4g22350.1 68417.m03231 ubiquitin carboxyl-terminal hydrolase
family protein similar to U4/U6.U5 tri-snRNP-associated
65 kDa protein [Homo sapiens] GI:13926071; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 510
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCLKTVPELRNALL---NYDK-SSTGGDTAGELT 517
GL N+ T ++N T+Q L V LRN L NY S G GELT
Sbjct: 201 GLNNIQKTEFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLGHRFGELT 249
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 209 KGVTLRDDTWGNFKLTNNALVLVMGSKEE-DVPAAPVEQTRFVEDMNEAELATAMDMPEG 385
K +++ WG L N L ++GSK+ +V A V QT+ ++ N+ L +D G
Sbjct: 100 KQLSVSGRNWGEVDLHGNTLTFLVGSKQAFEVSLADVSQTQ-LQGKNDVTLEFHVDDTAG 158
>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
identical to ubiquitin-specific protease 21 GI:11993482
[Arabidopsis thaliana]
Length = 732
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 383 GLINLGNTCYMNATVQCL-KTVP 448
GL N GNTC++ + +QC TVP
Sbjct: 164 GLYNSGNTCFIASVLQCFTHTVP 186
>At5g04920.1 68418.m00519 vacuolar protein sorting 36 family protein
/ VPS36 family protein contains Pfam PF04132: Vacuolar
protein sorting 36
Length = 440
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 104 MYPDVEVNTDDEPVLFKAQI--FALTGVQPERQKVVCKGVTLRDDTWGNFKLTNNALVLV 277
++ + EV T PVL + ++ F L+ + + + + LR GN LT + L+ +
Sbjct: 13 LFENAEVTTSGRPVLRRNEVECFLLSSIDIDSEDDPPRFTALRS---GNLILTTHRLIWI 69
Query: 278 MGSKEEDVPAA 310
E VP++
Sbjct: 70 PSQSNESVPSS 80
>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +2
Query: 326 RFVEDMNEAELATAMDM---PEGLINLGNTCYMNATVQCLKTVP----ELRNAL-LNYDK 481
RF+ + +L+ +D+ PE + NLG+ Y+N ++ +K++P +LR + LN +
Sbjct: 554 RFMPKLVVLDLSANLDLIKLPEEISNLGSLQYLNISLTGIKSLPVGLKKLRKLIYLNLEF 613
Query: 482 SSTGGDTAG 508
+ G G
Sbjct: 614 TGVHGSLVG 622
>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 862
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +2
Query: 326 RFVEDMNEAELATAMDM---PEGLINLGNTCYMNATVQCLKTVP----ELRNAL-LNYDK 481
RF+ + +L+ +D+ PE + NLG+ Y+N ++ +K++P +LR + LN +
Sbjct: 554 RFMPKLVVLDLSANLDLIKLPEEISNLGSLQYLNISLTGIKSLPVGLKKLRKLIYLNLEF 613
Query: 482 SSTGGDTAG 508
+ G G
Sbjct: 614 TGVHGSLVG 622
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,939
Number of Sequences: 28952
Number of extensions: 246827
Number of successful extensions: 636
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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