Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    27   6.2  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    27   8.1  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      27   8.1  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = -2

Query: 415 CSPIQMQLFLIDHQPFQHCGILILK*ALDKCYKPTVEKLIQNVLKLTLNS*GY--ECIKI 242
           C+   ++LF +++   +    L L   L+KC     EKL+++ L   L    +  E + I
Sbjct: 276 CAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDI 335

Query: 241 KEAFFEN--VKYFL-EKIVSHVQFCLQVFYQLKK 149
            EA FEN  ++  L + I++ +  C Q+  +L +
Sbjct: 336 VEALFENQTIRQKLRDSILARMPDCSQLARRLMR 369


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 434 VMALETVQPHSNAIVFDRSSTFSALWNI 351
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 434 VMALETVQPHSNAIVFDRSSTFSALWNI 351
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 VLHLFGKSDVMYGDTKFLILSDGSGNRAAPFKCNCF 388
           ++H+ G   ++Y  T FL +S   G+  A F C+ F
Sbjct: 64  IMHISGTGLMLYVGTTFLPISKEFGHFIAAFYCSTF 99


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 434 VMALETVQPHSNAIVFDRSSTFSALWNI 351
           V AL     H++   FD ++T SALWN+
Sbjct: 271 VHALSIAAVHAHTHRFDVTATLSALWNL 298


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 495 VLHLFGKSDVMYGDTKFLILSDGSGNRAAPFKCNCF 388
           ++H+ G   ++Y  T FL +S   G+  A F C+ F
Sbjct: 64  IMHISGTGLMLYVGTTFLPISKEFGHFIAAFYCSTF 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,063
Number of Sequences: 27780
Number of extensions: 202173
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)