Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     30   1.3  
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    29   1.7  
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    28   4.0  

>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 89  GYSPV*PYIWDPPPVCP 39
           G  P  P +W PPPVCP
Sbjct: 235 GIRPWPPQVWPPPPVCP 251


>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 242 IQCELKQI*TY*NQDFKGILSKFCQVSVSNISKEI*KLL 126
           I+C++K      +Q+ KG+ SKF +V  SN+ + +  LL
Sbjct: 448 IRCDIKVFKEIYSQETKGVHSKFVEVPPSNLHQHLGNLL 486


>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 413 RMYKIAKEL-LVWHCTS*IGRTN*Y*ISHTTL 321
           R+Y I KE  +V HC++ IGRT  Y   H T+
Sbjct: 305 RLYGIPKEHPIVAHCSAGIGRTGAYITIHNTI 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,935,302
Number of Sequences: 37544
Number of extensions: 201831
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)