Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60640.2 68418.m07611 thioredoxin family protein similar to p...    30   0.82 
At5g60640.1 68418.m07610 thioredoxin family protein similar to p...    30   0.82 
At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    29   1.4  
At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearl...    28   4.4  
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    27   5.8  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    27   7.7  
At2g42510.1 68415.m05261 spliceosome protein-related contains Pf...    27   7.7  
At1g26240.1 68414.m03201 proline-rich extensin-like family prote...    27   7.7  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    27   7.7  

>At5g60640.2 68418.m07611 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 536

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   NNGYGFSASQIYGQTGGGSQIYGYTG-EYPRAHY 102
           N  YG   ++ +G +G G ++ GYTG E P+ ++
Sbjct: 371 NEDYGKPVAEYFGVSGNGPKLIGYTGNEDPKKYF 404


>At5g60640.1 68418.m07610 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 597

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   NNGYGFSASQIYGQTGGGSQIYGYTG-EYPRAHY 102
           N  YG   ++ +G +G G ++ GYTG E P+ ++
Sbjct: 371 NEDYGKPVAEYFGVSGNGPKLIGYTGNEDPKKYF 404


>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 86  YSPV*PYIWDPPPVCPYIWEALNP*P 9
           YSP+ PY+++ PP  PY++ + +P P
Sbjct: 34  YSPLPPYVYNSPP--PYVYNSPSPPP 57



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 80  PV*PYIWDPPPVCPYIWEALNP*P 9
           P  PY++ PPP  PY++++  P P
Sbjct: 161 PPPPYVYSPPPPPPYVYQSPPPPP 184


>At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearly
           identical to acyl-activating enzyme 17 [Arabidopsis
           thaliana] GI:29893266; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-activating enzyme 17 (At5g23050) GI:29893265
          Length = 721

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   TNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHY 102
           + +GY +S  + +G TG  S I  Y     RAHY
Sbjct: 457 STSGYDWSRIRCFGSTGEASNIDEYLWLMGRAHY 490


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 86  YSPV*PYIWDPPPVCPYIWE 27
           YSP  PY + PPP CP +++
Sbjct: 382 YSPP-PYAYSPPPPCPDVYK 400


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 80  PV*PYIWDPPPVCPYIWEALNP*P 9
           P  PY++ PPP  PY++    P P
Sbjct: 428 PPPPYVYPPPPSPPYVYPPPPPSP 451


>At2g42510.1 68415.m05261 spliceosome protein-related contains Pfam
           domain, PF04938: Survival motor neuron (SMN) interacting
           protein 1 (SIP1)
          Length = 646

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +3

Query: 12  LWIQCFPNIWTDRRRIPNIRL 74
           +W+ CF ++  + +RIPN+++
Sbjct: 461 IWLSCFHHLRWEAKRIPNVKV 481


>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
           similar to hydroxyproline-rich glycoprotein precursor
           gi|727264|gb|AAA87902; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 478

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 80  PV*PYIWDPPPVCPYIWEALNP*P 9
           P  PY++  PP  PY++++ +P P
Sbjct: 431 PPPPYVYSSPPPPPYVYKSPSPPP 454


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  SPV*PYIWDPPPVCPYIWEALNP*P 9
           SP  PY++  PP  PY++ +  P P
Sbjct: 474 SPPPPYVYSSPPPPPYVYSSPPPPP 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,999
Number of Sequences: 28952
Number of extensions: 177203
Number of successful extensions: 461
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)