Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.71 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.71 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.71 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.71 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.71 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   1.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   1.2  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   2.9  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   3.8  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   5.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.7  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   8.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 141 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 242
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 141 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 242
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 341 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRIFRGFQTFV 192
           DLE   +++  L      LD Q   +  E  +L GE+I    + GF T +
Sbjct: 212 DLEAIYASLKNLNTDHGFLDGQKPFIFQEVIDLGGEAISKHEYTGFGTVI 261


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 341 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESIEPRIFRGFQTFV 192
           DLE    ++  L      LD Q   +  E  +L GE+I    + GF T +
Sbjct: 213 DLEAIYGSLKNLNTDHGFLDGQKPFIFQEVIDLGGEAISKHEYTGFGTVI 262


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 105 FPTNHQETSPQRIH 64
           FP NH    P+++H
Sbjct: 41  FPLNHLNEEPEKLH 54


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 192 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 94
           +P+G       S+  F ++FL   CT  C   N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 331 YPPPQSMSCSCLTVNWTTKGLP 266
           YPPP S+    ++V   T G P
Sbjct: 213 YPPPGSLGSMGVSVPCGTSGNP 234


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 41  QQADNDQYNSFH 6
           Q   +D YNSFH
Sbjct: 470 QTESSDNYNSFH 481


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 78  EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFF 176
           EKFP+ S E   +Y      E      TA  FF
Sbjct: 314 EKFPERSHEQQELYMAAQVIEKSVANFTAAGFF 346


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 41  QQADNDQYNSFH 6
           Q   +D YNSFH
Sbjct: 418 QTESSDNYNSFH 429


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,884
Number of Sequences: 336
Number of extensions: 3233
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)