Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309G12f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 4e-32
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 41 5e-04
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 27 9.4
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08) 27 9.4
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 134 bits (324), Expect = 4e-32
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +3
Query: 66 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 245
V F EKF D SWE WV S G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815
Query: 246 F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 338
F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816 FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 348 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYXG-KNHLIKK 482
C L Q+ +TPY IMFGPD CG +K+H IF + KN I++
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEE 72
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -2
Query: 325 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 155
P + SC CL V W T GLP L++G L R L+ + P S SL + V
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485
Query: 154 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 41
P++ G + + S+G+ S+ +SQ D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 286 WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 167
+TT+GLPS ++ +NL E NL S KP S + ++
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 128 VLTVHPIAFPRIIRKLLLKEYI 63
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = -3
Query: 135 FLGAHCTPNCFPT----NHQETS 79
F+ C PNC PT NHQ TS
Sbjct: 20 FINHSCEPNCIPTRVFVNHQPTS 42
>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 207 TSEDARFYALSRKFK--PFSNEGKPLVVQFTVKHEQDIDCG 323
T +D R Y R F+ PF++ + ++ KH+++I+CG
Sbjct: 870 TPQDNRHYVYFRDFQRDPFASLDMSELYKWINKHKKNIECG 910
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 166 PAVNLNFPNSFPGCSLYTQLLS 101
P+V LNF N+FPG L + +S
Sbjct: 6188 PSVELNFRNTFPGDDLLKRYIS 6209
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 180 DPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTV 296
D D KTSE AL K K E + +VVQFT+
Sbjct: 912 DSADILSRKTSEAVLESALESKTKELLVESRQMVVQFTI 950
>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
Length = 1057
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -2
Query: 202 KPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNAS 38
KPL G L + +N P+S PG + + LS + SS++ +F D AS
Sbjct: 980 KPLEGPGLLNTLAVLGMNSPSSRPGANDTSADLS-----SLSSQDEQEFQRDLAS 1029
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,354
Number of Sequences: 59808
Number of extensions: 392972
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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