Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.47 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.47 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.47 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   7.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 249 KPFSNEGKPLVVQFTVKHEQDID 317
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 KPLKMRGSMLSPVSSNRSVMRV 270
           +P   RG+++SP  + R  M+V
Sbjct: 893 EPYNQRGTVVSPPPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 205 KPLKMRGSMLSPVSSNRSVMRV 270
           +P   RG+++SP  + R  M+V
Sbjct: 931 EPYNQRGTVVSPPPTKRRTMKV 952


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 361 CSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPS 263
           C+S  + T R P        C T N++T   P+
Sbjct: 751 CASTTTITARSPQGSQGLLQCATSNYSTTRWPA 783


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 100 HESSGNFSSKNTSQFIEDNASKLTTTSTTA 11
           HE   N+ SKN +Q + +    +   S TA
Sbjct: 184 HEKLRNWFSKNVNQTVAETVRIIYGGSVTA 213


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 97  ESSGNFSSKNTSQFIE 50
           + +GNF+ KNT   ++
Sbjct: 74  DENGNFNEKNTRDIVQ 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,085
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)