Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    28   0.058
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    28   0.058
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    28   0.058
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 HITGLRVTANAGLQVERDGK 393
           H+TG+  T  AG Q +RDGK
Sbjct: 117 HMTGMGGTGTAGSQADRDGK 136



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 418 DLSASNIAVNLENAEIISGFINTIGPFIFDSI 513
           DL A  I  +L+N     GF++   PFIF  +
Sbjct: 212 DLEA--IYASLKNLNTDHGFLDGQKPFIFQEV 241


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 HITGLRVTANAGLQVERDGK 393
           H+TG+  T  AG Q +RDGK
Sbjct: 118 HMTGMGGTGTAGSQADRDGK 137


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 334 HITGLRVTANAGLQVERDGK 393
           H+TG+  T  AG Q +RDGK
Sbjct: 118 HMTGMGGTGTAGSQADRDGK 137


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25   EKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVP-DVKQSLTLG 156
            E  L   I  +L  Y +PDP  + G       P P  +K + T+G
Sbjct: 2178 EYPLLRTINRVLRGYAKPDPKCILGRDNDKTKPKPTTMKPTTTIG 2222


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 82  PTGLPGAKLP 111
           PTG PGA LP
Sbjct: 116 PTGHPGAALP 125


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 82  PTGLPGAKLP 111
           PTG PGA LP
Sbjct: 8   PTGHPGAALP 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,905
Number of Sequences: 336
Number of extensions: 2299
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)