Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.3  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.0  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    26   3.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   9.0  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 59   WSIINSRIPRGCRELNYQIHTQFRTSNSH 145
            W +I +RIP+ C + +Y ++  +R   SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 4   DEKLSEGEKKLSHNILAILEHYKQPDP--TGLPGAKLPDPYPV---PDVKQSLTLGTMNF 168
           D+ +S G   + HN +  ++H    DP  TGLP     D  P+    + + S+ +G   +
Sbjct: 265 DDSVSAGAAFIPHNPMDSIDHLDVNDPTATGLPVLPASDIDPLNLTGNTQDSMIIGQQTY 324

Query: 169 KNIALYGT 192
            +    GT
Sbjct: 325 PSHGSSGT 332


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +3

Query: 228  RSNGGPRRDDSRKIASTRQLHLRDVVQFGSGPVHCSHNRTEGDSERGPSSRARR 389
            RSNG  R +DSR     R  H     +  S       N  E D       RAR+
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQ 1596


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = +1

Query: 1   EDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKNIA 180
           E   L+EG +    +   +L+ Y+  +  G  GA     Y   DV  ++      FK  +
Sbjct: 18  ETSLLTEGPESDEEDEGPLLKQYRLKNMLGY-GA-CSTVYLAVDVSTNIEYAIKEFKKTS 75

Query: 181 LYGTNEFRLNYVKADIGAMEAHAVMTLE 264
           L    +FRL  ++ ++G+       T+E
Sbjct: 76  LRRREKFRLMQLEKELGSFNDMDSSTIE 103


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 363 VRCHPQSCYVNSERAPNRIEPRREGVVAACLQFFESHHGVGLHC 232
           + C  Q C      A   +E  R+G++ +  +F++    V + C
Sbjct: 226 ILCIHQLCEKKQFSAQQEVEQLRKGILQSLCEFYDDLRKVKIRC 269


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 315  SGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRH 416
            SG  H  HN    DS    +S A + ++   HRH
Sbjct: 1304 SGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHRH 1337


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 228 RSNGGPRRDDSRKIASTRQLH 290
           +SNG   +DD R+ A T+ +H
Sbjct: 360 KSNGETEKDDGRRRALTKAIH 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,617
Number of Sequences: 5004
Number of extensions: 40341
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)