Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309G07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811... 31 0.74
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039 31 0.74
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 29 1.7
03_01_0541 + 4064491-4064715,4065018-4065070,4065190-4065226,406... 29 2.3
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241... 29 3.0
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 29 3.0
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510... 28 4.0
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 28 5.2
10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308 27 6.9
06_03_0809 + 24814590-24816593 27 9.1
02_03_0382 + 18352508-18352841,18353817-18354028,18354190-183542... 27 9.1
>07_01_0968 -
8111340-8112067,8112496-8112566,8112663-8112837,
8112991-8113054,8113351-8113671,8114413-8114438,
8114495-8114573
Length = 487
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 334 HITGLRVTANAGLQVERDGKIRAENIVMDLSASNIAVNLENAEIISGFINTIGPFIFDSI 513
++ G+ + AG+ + G I + + ++S S+ + + N +I GF N++ P I + +
Sbjct: 385 NVVGVNI-GTAGMLLGIQGDIFSNICLSNVSLSSKSADPWNCSLIEGFSNSVAPEICEQL 443
Query: 514 KP 519
+P
Sbjct: 444 RP 445
>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
Length = 218
Score = 30.7 bits (66), Expect = 0.74
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 243 PRRDDSRKIASTRQLHLRDVVQF--GSGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRH 416
PR ++R A+ RQ L+++++ G G S R+ S P+S + +Q K R
Sbjct: 12 PRLRNTRSRATRRQPGLQELLRTVRGRGNEQDSKGRSHC-SRSAPASPSSERDQRMKRRR 70
Query: 417 GLIGQQHRCEPGKRR 461
+I H CE G+ +
Sbjct: 71 KMIEADHSCEDGEEK 85
>06_03_0151 +
17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 360 RCHP--QSCYVNSERAPNRIEPRREGVV-AACLQFFESHHGVGLHCSDIG 220
+C P C+V + P+ I P ++ AC F + GLHC D G
Sbjct: 428 QCGPVLMGCFVTVKAPPSSILPSGSSLLDKACETSFSEYELNGLHCQDTG 477
>03_01_0541 +
4064491-4064715,4065018-4065070,4065190-4065226,
4065409-4065474,4065809-4065907,4066000-4066153,
4066267-4066343,4066438-4066500
Length = 257
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 411 RHGLIGQQHRCEPGKRRNHLRIYQ 482
RH L G+ EPGK H RIYQ
Sbjct: 150 RHPLHGETFPAEPGKSSFHCRIYQ 173
>10_01_0228 +
2417187-2418061,2418127-2418319,2419011-2419025,
2419859-2419975
Length = 399
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 309 IEPRREGVVAACLQFFESHHGVGLHCSDIG 220
+EP R G L F E H+ V L C+DIG
Sbjct: 296 VEPGRHGAAPTILGFVEEHNEV-LLCTDIG 324
>02_02_0574 - 11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 340 TGLRVTANAGLQVERDGKIRAENIVMDLSASNIAVNLENAEIISGFINTIGPF 498
+G+ + A A +++DG+ ++ L S ++L+ E + I T+GPF
Sbjct: 959 SGIIIDALAFSYLDKDGERHTTSLWGGLGGSVQLIDLDEREFLMEVIGTVGPF 1011
>04_04_0838 -
28550036-28550237,28550595-28550676,28550972-28551011,
28551342-28551416,28551448-28551543,28551710-28551805,
28551897-28551974,28552064-28552170,28552450-28552477,
28552777-28552898,28554106-28554172,28554336-28554508,
28554763-28554846,28555616-28555733,28556093-28556164,
28557026-28557118,28557484-28557636,28558000-28558086,
28559436-28559528,28560416-28560643,28561106-28561207,
28561390-28561596,28561798-28561846,28562385-28562537,
28562649-28562712,28562905-28563175,28564008-28564072,
28564184-28564337
Length = 1052
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/90 (24%), Positives = 38/90 (42%)
Frame = +1
Query: 226 IGAMEAHAVMTLEKLQARGNYTFATWFNSVRGPFTVHITGLRVTANAGLQVERDGKIRAE 405
+ A E HA +E + T +FNS TVH+ L + + LQV +
Sbjct: 578 LSAHERHATSVVEVFRIVEE-TIEQFFNSSLPLDTVHLRSLLIGITSSLQVYLHHMENQQ 636
Query: 406 NIVMDLSASNIAVNLENAEIISGFINTIGP 495
+ MD+ + I+ + + I++I P
Sbjct: 637 GLTMDVKSGIISQQVNQVSNLLVGIDSIVP 666
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 513 DRIEDERSDGVDKS*DDFCV 454
D+ E+ RSDG+DK DD C+
Sbjct: 502 DKHEERRSDGLDKHDDDGCL 521
>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
Length = 735
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 397 RAENIVMDLSASNIAVNLENAEIISGFINTIGPFIFDSIK 516
R+ I+MDLS S +E A+ I I+ I PF + IK
Sbjct: 80 RSYCIIMDLSESKHKEYIERAQWIEENISNIKPFTEEDIK 119
>06_03_0809 + 24814590-24816593
Length = 667
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 46 ILAILEHYKQPDPTGLPGAKLPDPYPVPDV 135
+L L+H +PD T LP P P P P V
Sbjct: 233 MLVPLKHRPKPDVTVLPEPGPPSPAPAPAV 262
>02_03_0382 +
18352508-18352841,18353817-18354028,18354190-18354277,
18355017-18355474
Length = 363
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 1 EDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYP 123
+DEK E EK S N + E K+ DP+ L A L YP
Sbjct: 291 DDEKEKEKEKDDS-NAAEVEEKDKEKDPSALAAANLYMHYP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,915
Number of Sequences: 37544
Number of extensions: 295386
Number of successful extensions: 815
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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