Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   1.8  
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)                     29   2.3  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   2.3  
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)                   28   4.1  
SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)                     28   5.4  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_37016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 229 GAMEAHA-VMTLEKLQARGNYTFATWFNSVRGPFTVHITGLRVTANAGL 372
           G+M A   ++ L+ +Q RG+Y    WF +  G + +++  +R+T +  +
Sbjct: 88  GSMNALTLILDLQLIQIRGSYMSDFWFGTSVGYYDLNLNKVRITKHLAI 136


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 121 PVPDVKQSLTLGTMNFKNIALYGTNEFRLNYVKADIGAMEAHAVMTLEKLQARGN 285
           P  D  +++ L    F  I+L G     LNY++A +G +EA   +    L+ RG+
Sbjct: 145 PTCDQLKTMRLDKSPFVMISLIGQELLSLNYLQAAVGCLEAALKIGTCGLKLRGS 199


>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
          Length = 278

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 73  QPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKNIALYG 189
           +P+ TG+ G   P P   PD  Q+   G    +++AL G
Sbjct: 190 KPNGTGMSGISGPRPKKAPDKNQAKLSGGPKLRHVALIG 228


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 76  PDPTGLPGAKLPDPYPVPDVKQSL---TLGTMNFKNIALYGTNEFR 204
           P P     AKLP+P P+P++  +L   TLG +    +      EFR
Sbjct: 235 PSPPRPLAAKLPEPPPIPNMPPTLPPPTLGYLPTARLTRESVTEFR 280


>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
          Length = 349

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 348 EGDSERGPSSRARR*NQSGKHRHGLIGQQHRCEPGKRRNHLRIYQH-HRTVHLRFDQTL 521
           EGD E+    + R   Q  +H+ G    + R   GKRRN  R  Q   +  H  FD+ +
Sbjct: 278 EGDEEKEFYRKDREEKQKRRHKKGRDFGRGRGRGGKRRNFERSDQSAPKGTHTHFDKAV 336


>SB_43457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
 Frame = -3

Query: 384 SLYLKARVRCHPQSCYVNSERAPNRIE--------PRREGVVAACLQFFESHHGVGLHCS 229
           SL L  R+ C     +  S R PN +         P +EG +++ L F  S  G  +  S
Sbjct: 69  SLVLPERIHCPTSLYFSQSLRNPNNVTLLAALLDCPGQEGPLSSTLNFDHSPIGENIDLS 128

Query: 228 DIGLN 214
           + GLN
Sbjct: 129 EHGLN 133


>SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)
          Length = 246

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 70  KQPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKNIAL 183
           + PDPT  P    PD Y +PD   ++ +G  N   + L
Sbjct: 12  QSPDPT--PRILTPDIYRIPDPPAAIVVGMQNTSYVVL 47


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +1

Query: 76  PDPTGLPGAK----LPDPYPVPDVKQSLTL 153
           PDPT +P  +    +PDP PVP V+ ++ +
Sbjct: 397 PDPTPVPKVQTTIDMPDPIPVPKVQTTIDM 426



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +1

Query: 70  KQPDPTGLPGAK----LPDPYPVPDVKQSLTL 153
           + PDPT +P  +    +PDP PVP V+ ++ +
Sbjct: 488 EMPDPTPVPKVQTNIDMPDPIPVPKVQTTVDM 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,929
Number of Sequences: 59808
Number of extensions: 331100
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)