Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 382 RDGKIRAENIVMDLSASNIAVNL 450
           R  ++RAE+I M+   +NIAV+L
Sbjct: 175 RQYRLRAEDINMNTFIANIAVDL 197


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 41  IISWLFWSIINSRIPRGCRELNYQIHTQFRTSNS 142
           I  WLFW   NS    G  +    I+T    S S
Sbjct: 218 IFLWLFWPSFNSAALEGDDQQRAIINTLLSISAS 251


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 312 GSGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRH 416
           GS P H   N T G +   P        QS +H H
Sbjct: 331 GSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLH 365


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 127 ELGMDLVV*LPAAPWDPAVYNAPE*PRYY 41
           E+G+DL    P+  WD     A    +YY
Sbjct: 187 EIGIDLREYYPSVEWDILGVPAERHKKYY 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,156
Number of Sequences: 438
Number of extensions: 3146
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)