Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309G05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 135 3e-33
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 69 3e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 66 4e-12
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 59 5e-10
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 57 1e-09
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 54 2e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 5e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 48 8e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 46 5e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 45 8e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 1e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 43 2e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 40 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 2e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 7e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.003
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.006
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 34 0.011
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.011
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.015
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.045
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 32 0.060
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.10
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.14
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.24
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.42
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 1.7
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.7
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.0
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 26 3.9
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 3.9
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 5.2
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 6.8
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 6.8
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 9.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 135 bits (327), Expect = 3e-33
Identities = 59/135 (43%), Positives = 95/135 (70%)
Frame = +1
Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
+ H +DG+I++P RA+PREE ++ K+FV G+ D EE+ R +F+ FG ++
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 475 SVVTDKETGKKRGFG 519
+++ DK+TG+ RGFG
Sbjct: 277 TLMMDKDTGRPRGFG 291
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 274 VDEAQNNRPH-KIDGRIVEPIRAVPREEIK 360
V EA ++P+ I G+ VE RA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 69.3 bits (162), Expect = 3e-13
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Frame = +1
Query: 67 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 246
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 247 FITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEA-----------SATVKK 390
++ + A N +IDGR+V + PR +P A S
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
+FV L + E+DL F G+I S+ + TD ++G+ +GFG
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFG 410
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +1
Query: 82 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 262 QAHMVDEAQNNRPHKIDGR 318
+ H I GR
Sbjct: 416 DIDSAKKCVEMNGHFIAGR 434
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 65.7 bits (153), Expect = 4e-12
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 13/147 (8%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 298 PHK-IDGRIVEPIRAVPR----EEIKRPEASATVKK--------LFVAGLKQDIEEEDLR 438
K G+ + RA + EE+++ ++K LF+ L+ ++++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519
FS FG I S ++TD E GK +GFG
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFG 407
Score = 55.2 bits (127), Expect = 6e-09
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
L++G LD T++ L E + G + + V +D T+RS G+ ++ + ++A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 298 PHK-IDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
+ I GR P R + + T +F+ L I+ + L + FS FG I+S
Sbjct: 142 NYTLIKGR---PCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 475 SVVTDKETGKKRGFG 519
V D E G +G+G
Sbjct: 198 KVAVD-ELGNAKGYG 211
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/101 (25%), Positives = 45/101 (44%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
LFI L D LK + +G I +M D + K SKGFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEM 424
Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDI 420
++ + R+E++R + A ++ L+Q +
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 58.8 bits (136), Expect = 5e-10
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Frame = +1
Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 274 VDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450
V+ A Q K+ G+ PIR V R R + LFV L ++E L + FS
Sbjct: 65 VEYACQILNQVKLFGK---PIR-VNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFS 120
Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519
G +V V E G+ +G+G
Sbjct: 121 ALGQLVKAPQVARDENGRSKGYG 143
Score = 38.3 bits (85), Expect = 7e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQ 288
LF+G LD + L + + G++V + + RSKG+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 289 NNR 297
NN+
Sbjct: 161 NNQ 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 57.2 bits (132), Expect = 1e-09
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 295 RPHKIDGRIVEPIRAVPRE--EIKRPEASATVK--------KLFVAGLKQDIEE-EDLRE 441
+ K+ GRI+ A PR+ E+ + A K +L + L I++ + L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 442 YFSTFGNIVSVSVVTDKETGKKRGF 516
+FS FG + + + T K G+ GF
Sbjct: 127 HFSKFGKVREIKIPT-KGGGRMCGF 150
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
LFV L +++DL +FS G I VVT+ ETG+ RG+G
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYG 49
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 53.6 bits (123), Expect = 2e-08
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Frame = +1
Query: 67 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 244 GFITYSQAHMVDEAQNNRPHKIDGR--IVEPIRAVPREEIKRP-----EASATV--KKLF 396
++ + V A ++ G IV+ A + + ASA + +L
Sbjct: 284 AYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLC 343
Query: 397 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
V+ + ++ +ED++ F FG+I V + D + + +GFG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFG 383
Score = 38.7 bits (86), Expect = 5e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
E P H +L + + + TD +K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 295 RPHKIDGRIVEPIRA 339
+ GR++ +A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 346 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
+E PE S + LFV+G+ ++E++L++ FS FG + V ++ + T RGFG
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 5e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
LF+G LD+ TTD+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 41.1 bits (92), Expect = 1e-04
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Frame = +1
Query: 106 HTRKLFIGGLDYRTTDSSLKEFYEQ-----WGEIVDVVVMKDPKTKR--SKGFGFITYSQ 264
HT K + R T +KE E+ E + + M K KR +KGF ++ ++
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT 174
Query: 265 AHMV-------DEAQNNRPHKI------DGRIVEPIRAVPREEIKRPEASATVKKLFVAG 405
+ ++A N R I GR +P + + + LFV
Sbjct: 175 EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
Query: 406 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
L + + DL+E+F G I V ++T ++TGK +GFG
Sbjct: 235 LDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 48.0 bits (109), Expect = 8e-07
Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--N 291
L++G L+ T++ +++ + G+ V V ++++ T + G+ F+ ++ H A N
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFGNIV 468
N+P + + A ++ + A+ +FV L ++ E D+ F S + +
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 469 SVSVVTDKETGKKRGFG 519
S ++TD +T RG+G
Sbjct: 215 SAKIMTDPQTNVSRGYG 231
Score = 40.7 bits (91), Expect = 1e-04
Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 26/154 (16%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--------AH 270
+F+G L + + F ++ +M DP+T S+G+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 271 MVDEAQNNRPHKID-------GRIVEPIRAVPRE-------EIKRPE---ASATVKKLFV 399
M + +RP ++ + P+ VP +P A +FV
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 400 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
GL + + EE+L+ F FG IV V + K G
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCG 341
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 45.6 bits (103), Expect = 5e-06
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +1
Query: 100 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 277 DEAQNNRPHKI-DGRIVEPIRA 339
D+A K+ +GR + +RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 349 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
+ + P T + +FV L + EEE L YF G+I V +V D +T +GF
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGF 313
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 44.8 bits (101), Expect = 8e-06
Identities = 17/89 (19%), Positives = 48/89 (53%)
Frame = +1
Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASA 378
++ R++ + + PRE +++ S+
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSS 843
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
+++ L D+ E+D+ FS FG V +++V DKETGK +GF
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGF 74
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +1
Query: 67 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 241 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 324
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 1e-05
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 124 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 303
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 304 KIDGRIVEPIRAVPREEIKRPEAS 375
+ GR V A PR R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
L V L D EE+LR+ F FG I V + DKETG+ +GF
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGF 245
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 76 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 250 ITY 258
++Y
Sbjct: 248 VSY 250
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
+LFV L D+ +E L + FS + ++V VV D+E GK RGFG
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFG 73
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
LFV L ++EDL FS FG I+S V+ DKETG
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETG 282
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.9 bits (89), Expect = 2e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 274 VDEA 285
V A
Sbjct: 109 VPNA 112
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 38.3 bits (85), Expect = 7e-04
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 349 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
E+ + + + K+LF+ L E+DL+ F FG + V + DK+T +GF
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGF 366
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 37.5 bits (83), Expect = 0.001
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Frame = +1
Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
+LF+G + + T + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 295 RPHK--IDGRI-VEPIRAVPREE--------IKRPEASATVKKLFVAGLKQDIEEEDLRE 441
K + RI VEP R R K P T +L V L +D+ +DL++
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 442 YFSTFG 459
G
Sbjct: 117 VMRKAG 122
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 79 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 259 SQAHMVDEA-QNNRPHKIDGRIV 324
S A A + K GR+V
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLV 136
Score = 35.1 bits (77), Expect = 0.006
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
LFV L +D E L+ +F G + SV + TDK +G+++G+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGY 135
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
+FV + D+ E+ + E F+ G + + +V D ETG +G+G
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYG 51
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 64 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 244 GFITYSQ 264
GF + +
Sbjct: 340 GFACFEE 346
Score = 35.9 bits (79), Expect = 0.004
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
E+++ + +++ GL + +E+L Y + FG + S + D ET +G+G
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYG 340
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 118 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 364 PEASATVK--KLFVAGLKQDI--EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
P ++ T+ LFV L +I + L E FS FG I S ++ + T +G+G
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 34.3 bits (75), Expect = 0.011
Identities = 17/83 (20%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 288
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 289 NNRPHKIDGRIVEPIRAVPREEI 357
+N + + G++++ + +P +++
Sbjct: 167 HN--YLLYGKLLQ-CKVIPEDQV 186
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
L+V L E+ +R YFS FG ++ + + +++TG + +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHY 148
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.011
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Score = 31.5 bits (68), Expect = 0.079
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
++V + ++ EE + + F G + S +V D E+G+ +G+G
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYG 49
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.015
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 294
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 295 RPHKIDGRIV 324
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.045
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
LF+ L+ ++ L K++++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 286 QNNRPHKI-DGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGN 462
+ + I DGR + I+R + + T+ ++ A + I ++D+ +G
Sbjct: 138 LSEAQNTILDGRHI---------RIERAKVNRTI-RISSAPHQPYITKKDIDNLLEPYGE 187
Query: 463 IVSVSVVTDK 492
+ V+ + D+
Sbjct: 188 VEDVTEIPDQ 197
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.060
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Frame = +1
Query: 97 EPEHTRKLFIGGLDYRTTDSSL-KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---- 261
+PE + +F+G L T DS L F + ++ DP T S+ +GF+ +S
Sbjct: 179 DPEFS--IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKE 236
Query: 262 QAHMVDEAQN----NRPHKIDGRIVEPIRAVPREEIKRPEASATVKK------------- 390
Q H + Q RP +I + ++ + ++T +
Sbjct: 237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
Query: 391 --LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
+FV GL ++ E+DL+ F FG I+++ + K G
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCG 335
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.1 bits (67), Expect = 0.10
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 100 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 274 VDEAQN 291
A++
Sbjct: 438 AVRAKD 443
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 364 PEASATVKKLFVAGLKQDIE--EEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
P + L+V L + + L + FS FG+I+S + +G +G+G
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYG 428
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 492
+ S + +F+ L I E+++RE FG I + +VT++
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 192
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.24
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Frame = +1
Query: 79 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VDVVVMKDP-----------K 222
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 223 TKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPE 369
+R +GFGF++++ A E Q+ +++G+ V + V + + R +
Sbjct: 254 QRRGRGFGFVSFANA----EDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.42
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +1
Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
K++++ L ++ E+ + E FG+++S ++ + G +GF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGF 353
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -3
Query: 393 QLFNGGTSFWSFNLFPWNCSYWLDNSSVNFVRPIILSFINHMGLRICNK 247
QL SF +F +F Y L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 385 KKLFVAGLKQDIEEEDLR-EYFSTFGNIVSVSVVTDKETGKKRGF 516
+++ + GL +I EE + ++T + +V+++ +KET K R F
Sbjct: 71 QEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCF 115
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 292 NRPHKIDGRIVEPIRAVPREE-IKRPEASATVKK 390
+++ GR +E V R E K+P S K
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 106 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 207
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +1
Query: 160 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH------KIDGRI 321
L F E E + +++ + F F++ +++ +D ++ + K GRI
Sbjct: 3 LGRFLENGREQIRNLLLNASTVSSAPSFSFVSGNESADLDSCASSIVYAYCLQRKQLGRI 62
Query: 322 VEPIRAVPREEIK-RPEAS 375
V P +PR+E++ RPE S
Sbjct: 63 VVPFFNIPRKELRLRPELS 81
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 70 PSESGDDYEEPEHTRKLFI 126
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 480
++V L ++I ++LR YF FG I+ V
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 259 SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLK 411
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 168
+ GD + R LF YRT DSS+K+
Sbjct: 353 QQGDSFPSLPEIRALFKDCKFYRTIDSSIKD 383
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 151 DSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
D +KE + E++ V + DP+TK+SK
Sbjct: 136 DKKVKELEKIQKELLVVYELPDPETKKSK 164
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 142 RTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
R T S L F++ W +VD + + K +GF
Sbjct: 262 RKTYSGLAPFHDFWAVVVDEGIFSSTSSLERKFWGF 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,986
Number of Sequences: 5004
Number of extensions: 40017
Number of successful extensions: 205
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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