Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 509 LFFPVSLSVTTLTETIFPNVL 447
           +F PVS   TT+   I+P V+
Sbjct: 829 MFLPVSYMSTTMAGVIYPPVI 849


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 406 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L  D+ +      F+  GN ++     D  TG  RGFG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 406 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L  D+ +      F+  GN ++     D  TG  RGFG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQW 183
           +FI  L+ ++T S  K+  ++W
Sbjct: 315 MFIADLNNQSTASDFKQLIDRW 336


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 187 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 309
           E + V+V   P+T R    G +T ++  +    +  R H +
Sbjct: 69  EKLKVLVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAV 109


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFST 453
           K+  +    + L + GL+ + E+E +R  FST
Sbjct: 94  KKKRSLMGAQGLSIRGLQINHEDETIRPVFST 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,592
Number of Sequences: 438
Number of extensions: 2515
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)