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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...   108   2e-24
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...   108   2e-24
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...   108   3e-24
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...   108   3e-24
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...   107   4e-24
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...   106   1e-23
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...   106   1e-23
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...   103   6e-23
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...   103   6e-23
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...   103   6e-23
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...   102   1e-22
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ...   102   1e-22
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    97   5e-21
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    97   8e-21
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    91   3e-19
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    90   7e-19
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    88   4e-18
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ...    81   4e-16
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ...    81   4e-16
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    81   6e-16
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to...    80   1e-15
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    77   5e-15
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    74   7e-14
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    71   5e-13
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ...    69   2e-12
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    69   3e-12
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    69   3e-12
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    69   3e-12
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    68   3e-12
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    68   4e-12
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    66   2e-11
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    66   2e-11
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    63   1e-10
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    63   1e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    63   1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    63   1e-10
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ...    63   1e-10
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ...    63   1e-10
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ...    63   1e-10
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ...    63   1e-10
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    62   2e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    62   2e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    62   2e-10
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    62   2e-10
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    62   2e-10
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    62   2e-10
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    62   3e-10
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    61   4e-10
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ...    61   5e-10
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    61   5e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    61   5e-10
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    60   9e-10
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    60   9e-10
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    60   1e-09
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat...    60   1e-09
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ...    59   2e-09
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    58   3e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    58   3e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    58   3e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    58   3e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    58   3e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila...    58   3e-09
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    58   4e-09
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t...    58   4e-09
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    58   5e-09
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    58   5e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              57   6e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    57   6e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    57   6e-09
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    57   6e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)...    57   8e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    57   8e-09
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       56   1e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    56   1e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    56   2e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    55   3e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    55   3e-08
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    55   3e-08
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      55   3e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    54   6e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    54   6e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    53   1e-07
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    53   1e-07
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    53   1e-07
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    53   1e-07
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    53   1e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    53   1e-07
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    53   1e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    52   2e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    52   2e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    52   2e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    52   2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    52   2e-07
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    51   4e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    51   4e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    51   4e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    51   5e-07
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    50   1e-06
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    50   1e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    50   1e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    50   1e-06
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    49   2e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat...    49   2e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    49   2e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ...    49   2e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    49   2e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    49   2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    48   3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    48   3e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    48   5e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ...    48   5e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea...    48   5e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea...    48   5e-06
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    47   7e-06
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    47   7e-06
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    47   7e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    47   9e-06
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    46   1e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    46   1e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila...    46   2e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila...    46   2e-05
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    46   2e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s...    46   2e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    46   2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    45   3e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    45   4e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    45   4e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    45   4e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    45   4e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    44   5e-05
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    44   5e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    44   5e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ...    44   6e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    43   1e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    43   1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    43   1e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    42   2e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr...    42   3e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    42   3e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    42   3e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    42   3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    42   3e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28...    41   6e-04
At2g47310.1 68415.m05906 flowering time control protein-related ...    41   6e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    41   6e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    40   8e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    40   8e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    40   8e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    40   0.001
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ...    40   0.001
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ...    40   0.001
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    40   0.001
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    40   0.001
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    39   0.002
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative...    39   0.002
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    39   0.002
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    39   0.002
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    39   0.002
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    39   0.002
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ...    38   0.003
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative...    38   0.004
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    38   0.004
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    38   0.005
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ...    38   0.005
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    38   0.005
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    38   0.005
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s...    37   0.007
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    37   0.007
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    36   0.012
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    36   0.017
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    36   0.017
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    36   0.017
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    36   0.022
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    35   0.029
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ...    35   0.029
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    35   0.029
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    35   0.029
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    34   0.050
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    33   0.088
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ...    32   0.20 
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    32   0.20 
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ...    31   0.36 
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    31   0.36 
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    31   0.36 
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu...    31   0.36 
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t...    31   0.36 
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    31   0.36 
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    31   0.47 
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ...    31   0.47 
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    31   0.47 
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi...    31   0.47 
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    31   0.47 
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ...    31   0.47 
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    31   0.62 
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    30   0.82 
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein...    30   1.1  
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t...    30   1.1  
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    29   1.4  
At4g38440.1 68417.m05432 expressed protein                             29   1.4  
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (...    29   1.4  
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    29   1.9  
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    29   1.9  
At5g13655.1 68418.m01588 hypothetical protein                          29   1.9  
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ...    29   1.9  
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ...    29   1.9  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    29   1.9  
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ...    29   2.5  
At4g10610.1 68417.m01735 RNA-binding protein, putative                 28   3.3  
At1g72800.1 68414.m08416 nuM1-related contains similarity with n...    28   3.3  
At1g41855.1 68414.m04833 hypothetical protein                          28   3.3  
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ...    28   4.4  
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    28   4.4  
At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    28   4.4  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    28   4.4  
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ...    28   4.4  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    28   4.4  
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    27   5.8  
At2g33440.1 68415.m04099 splicing factor family protein similar ...    27   5.8  
At1g78810.2 68414.m09186 expressed protein                             27   5.8  
At1g78810.1 68414.m09185 expressed protein                             27   5.8  
At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ...    27   5.8  
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ...    27   7.7  
At3g58950.1 68416.m06569 F-box family protein contains F-box dom...    27   7.7  
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi...    27   7.7  
At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /...    27   7.7  
At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /...    27   7.7  
At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /...    27   7.7  
At1g48880.1 68414.m05476 hypothetical protein                          27   7.7  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    27   7.7  

>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/135 (37%), Positives = 83/135 (61%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+FIGGL   TT++   + + ++GEI D V+M+D  T + +GFGFIT++   +VD+   +
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
             H I+G+ VE  R +P+            KK+FV G+   + E++L+++F+ +GN+V  
Sbjct: 80  T-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138

Query: 475 SVVTDKETGKKRGFG 519
            V+ D ET + RGFG
Sbjct: 139 QVIRDHETNRSRGFG 153



 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
 Frame = +1

Query: 70  PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
           P  +G +  +   T+K+F+GG+    T+  LK+F+ ++G +V+  V++D +T RS+GFGF
Sbjct: 95  PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154

Query: 250 ITYSQAHMVDE--AQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375
           + +    +VDE  ++ N     D + VE  +A P++ + R   S
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQ-VEIKKAEPKKSLNRSPPS 197



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           A+  K+F+ GL +D       ++F  +G I    ++ D+ TG+ RGFG
Sbjct: 16  ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/135 (37%), Positives = 83/135 (61%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+FIGGL   TT++   + + ++GEI D V+M+D  T + +GFGFIT++   +VD+   +
Sbjct: 20  KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79

Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
             H I+G+ VE  R +P+            KK+FV G+   + E++L+++F+ +GN+V  
Sbjct: 80  T-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138

Query: 475 SVVTDKETGKKRGFG 519
            V+ D ET + RGFG
Sbjct: 139 QVIRDHETNRSRGFG 153



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 25/71 (35%), Positives = 46/71 (64%)
 Frame = +1

Query: 70  PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
           P  +G +  +   T+K+F+GG+    T+  LK+F+ ++G +V+  V++D +T RS+GFGF
Sbjct: 95  PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154

Query: 250 ITYSQAHMVDE 282
           + +    +VDE
Sbjct: 155 VIFDSEEVVDE 165



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           A+  K+F+ GL +D       ++F  +G I    ++ D+ TG+ RGFG
Sbjct: 16  ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score =  108 bits (259), Expect = 3e-24
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T +  LKE++  +GE+++ V++KD  T R++GFGF+ ++    V E    
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65

Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 438
             H IDGR+VE  +AVPR++   + R  +S+           +K+FV GL   + E D +
Sbjct: 66  EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125

Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519
            YF  FG    V V+ D  T + RGFG
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFG 152



 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 41/92 (44%), Positives = 57/92 (61%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P  TRK+F+GGL    T+S  K ++EQ+G   DVVVM D  T+R +GFGFITY     V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375
           +      H+++G++VE  RAVP+E    P  S
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score =  108 bits (259), Expect = 3e-24
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T +  LKE++  +GE+++ V++KD  T R++GFGF+ ++    V E    
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65

Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 438
             H IDGR+VE  +AVPR++   + R  +S+           +K+FV GL   + E D +
Sbjct: 66  EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125

Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519
            YF  FG    V V+ D  T + RGFG
Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFG 152



 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 41/92 (44%), Positives = 57/92 (61%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P  TRK+F+GGL    T+S  K ++EQ+G   DVVVM D  T+R +GFGFITY     V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375
           +      H+++G++VE  RAVP+E    P  S
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score =  107 bits (257), Expect = 4e-24
 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
 Frame = +1

Query: 67  KPSES---GDDYEEP------EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDP 219
           KPSE     DD  +P      +   K+F+GGL   TT +   + + ++GEI D V+MKD 
Sbjct: 18  KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77

Query: 220 KTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396
           KT + +GFGF+TY+ + +VD+  Q+N  H I G+ VE  R +PR  +   +     KK+F
Sbjct: 78  KTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGSMSSNDFK--TKKIF 133

Query: 397 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           V G+   +++++ +E+F  FG +    ++ D  TG+ RGFG
Sbjct: 134 VGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFG 174



 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE-- 282
           T+K+F+GG+     D   KEF+ Q+GE+ +  +M+D  T RS+GFGF+TY    MVD   
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188

Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396
           A+ NR  ++ G  VE    + + E K+P +  T  K F
Sbjct: 189 AKGNR-IELSGTQVE----IKKAEPKKPNSVTTPSKRF 221


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score =  106 bits (254), Expect = 1e-23
 Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T++  L++++  +GE+++ V+MKD  T R++GFGF+ ++  ++ +     
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 295 RPHKIDGRIVEPIRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 444
           + H IDG+IVE  +AVPR++          ++     +  KK+FV GL   + E + ++Y
Sbjct: 67  K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125

Query: 445 FSTFGNIVSVSVVTDKETGKKRGFG 519
           F+ FG I  V V+ D  T + RGFG
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFG 150



 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 34/84 (40%), Positives = 57/84 (67%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P +++K+F+GGL    T++  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161

Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351
           +      H+++G++VE   AVP++
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score =  106 bits (254), Expect = 1e-23
 Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 10/145 (6%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T++  L++++  +GE+++ V+MKD  T R++GFGF+ ++  ++ +     
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 295 RPHKIDGRIVEPIRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 444
           + H IDG+IVE  +AVPR++          ++     +  KK+FV GL   + E + ++Y
Sbjct: 67  K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125

Query: 445 FSTFGNIVSVSVVTDKETGKKRGFG 519
           F+ FG I  V V+ D  T + RGFG
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFG 150



 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 34/84 (40%), Positives = 57/84 (67%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P +++K+F+GGL    T++  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161

Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351
           +      H+++G++VE   AVP++
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185


>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score =  103 bits (248), Expect = 6e-23
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T +  L++++  +G++V+ V+M+D  T R++GFGFI ++    V E    
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65

Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432
             H IDGR VE  +AVPR++   +KR  +               KK+FV GL   I EE+
Sbjct: 66  DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            + YF  FG I  V V+ D  T + RGFG
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 36/81 (44%), Positives = 54/81 (66%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL    T+   K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168

Query: 289 NNRPHKIDGRIVEPIRAVPRE 351
           +   H+++G++VE  RAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score =  103 bits (248), Expect = 6e-23
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T +  L++++  +G++V+ V+M+D  T R++GFGFI ++    V E    
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65

Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432
             H IDGR VE  +AVPR++   +KR  +               KK+FV GL   I EE+
Sbjct: 66  DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            + YF  FG I  V V+ D  T + RGFG
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 36/81 (44%), Positives = 54/81 (66%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL    T+   K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168

Query: 289 NNRPHKIDGRIVEPIRAVPRE 351
           +   H+++G++VE  RAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score =  103 bits (248), Expect = 6e-23
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T +  L++++  +G++V+ V+M+D  T R++GFGFI ++    V E    
Sbjct: 7   KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65

Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432
             H IDGR VE  +AVPR++   +KR  +               KK+FV GL   I EE+
Sbjct: 66  DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            + YF  FG I  V V+ D  T + RGFG
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 36/81 (44%), Positives = 54/81 (66%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL    T+   K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168

Query: 289 NNRPHKIDGRIVEPIRAVPRE 351
           +   H+++G++VE  RAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score =  102 bits (245), Expect = 1e-22
 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 17/169 (10%)
 Frame = +1

Query: 64  MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
           M P E     E      KLFIGG+ + T +  L+E++ ++G++V+ V+M+D  T R++GF
Sbjct: 1   MNPEEQ--KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58

Query: 244 GFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREE---IKR---------PE-----A 372
           GFI ++   + +    ++ H IDGR VE  +AVPR++   +KR         P       
Sbjct: 59  GFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG 117

Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            A  KK+FV GL   I E + + YF  FG I  V V+ D  T + RGFG
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166



 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 36/81 (44%), Positives = 55/81 (67%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL    T++  K +++Q+G I DVVVM D  T+R +GFGFIT+     VD   
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180

Query: 289 NNRPHKIDGRIVEPIRAVPRE 351
           +   H+++G++VE  RAVP+E
Sbjct: 181 HKTFHELNGKMVEVKRAVPKE 201


>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
           protein similar to GB:L02953 from [Xenopus laevis]
           (Nucleic Acids Res. 21, 999-1006 (1993)); contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 369

 Score =  102 bits (245), Expect = 1e-22
 Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLF+GG+ + TT  +   ++ ++GE+VD V+M D  T   +GFGF+T++ +  V E    
Sbjct: 67  KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLE 125

Query: 295 RPHKIDGRIVEPIRAVPR-EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471
             H ID R V+  R +PR ++    +A +  +K+FV GL   +EE++L+ YF  +G+I+ 
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185

Query: 472 VSVVTDKETGKKRGFG 519
             ++ D  TG+ RGFG
Sbjct: 186 HQIMYDHHTGRSRGFG 201



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = +1

Query: 88  DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           D +    TRK+F+GGL     +  LK ++  +G+I++  +M D  T RS+GFGF+T+   
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208

Query: 268 HMVDEA-QNNRPHKIDGRIVEPIRAVPR 348
             VD    + + H++  + VE  RA P+
Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRAEPK 236


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 97.5 bits (232), Expect = 5e-21
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 14/149 (9%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLF+GG+ + T +  L+E +  +GE+   +VM+D  T R +GFGF+ +S   ++D     
Sbjct: 7   KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

Query: 295 RPHKIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEED 432
           + H ID R V+  RA+ REE                  +A    KK+FV GL   + +E+
Sbjct: 67  K-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            R+YF  +G +  V+++ D+ T + RGFG
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFG 154



 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 35/98 (35%), Positives = 56/98 (57%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           LN   S  GD Y +   T+K+F+GGL    TD   ++++E +G + DV +M D  T R +
Sbjct: 95  LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151

Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPRE 351
           GFGF+++     VD   +   H + G+ VE  RA+P++
Sbjct: 152 GFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 14/149 (9%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ + T ++ L+E++  +GE++ V VM++  T R +GFGF+ +S   ++D    +
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASAT--------------VKKLFVAGLKQDIEEED 432
           + H ID R V+  RA+ REE      S T               KK+FV GL   +  ++
Sbjct: 67  K-HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            R YF T+G +    ++ D+ T + RGFG
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFG 154



 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 28/81 (34%), Positives = 49/81 (60%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL    T    + ++E +G + D V+M D  T+R +GFGF+++     VD   
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168

Query: 289 NNRPHKIDGRIVEPIRAVPRE 351
           +   H ++G+ VE  RA+P++
Sbjct: 169 HKTFHDLNGKQVEVKRALPKD 189


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFG 246
           SE G  + EP    KLF+G L Y     +L   +EQ G  EI +V+  +D  T +S+GFG
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFG 157

Query: 247 FITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPR--EEIKRPEASATVKKLFVAGLKQD 417
           F+T S     ++A +     +++GR +   RA PR     ++P       +++V  L  D
Sbjct: 158 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWD 217

Query: 418 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++   L   FS  G +V   VV+D+ETG+ RGFG
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++++G L +      L+  + + G++VD  V+ D +T RS+GFGF+  S  + V+ A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 44/136 (32%), Positives = 75/136 (55%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RKL + G+ +      LK++  ++G++ D +VMKD  T RS+GFG++T++ A     A  
Sbjct: 3   RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62

Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471
              H +  RI+E   A P+EE+++P    T  ++FVA +   + E D R +F  +G I  
Sbjct: 63  GE-HFLGNRILEVKVATPKEEMRQPAKKVT--RIFVARIPSSVSESDFRSHFERYGEITD 119

Query: 472 VSVVTDKETGKKRGFG 519
           + +  D  + + RG G
Sbjct: 120 LYMPKDYNSKQHRGIG 135



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
 Frame = +1

Query: 55  ILNMKPSESGDDYEEP-EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKR 231
           IL +K +   ++  +P +   ++F+  +    ++S  +  +E++GEI D+ + KD  +K+
Sbjct: 71  ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130

Query: 232 SKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRP 366
            +G GFIT+S A  V++   +  H + G  V   RA P+E+   P
Sbjct: 131 HRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKEDDHPP 174



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 29/89 (32%), Positives = 49/89 (55%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+G L    +   L++++ ++G I D  + KDPK    +GFGF+T+++  + D     
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299

Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASAT 381
           R H+I G+ V    A P +E   P A A+
Sbjct: 300 RSHEICGQEVAIDSATPLDE-AGPSAGAS 327



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           P       K+FV  L Q+   +DLR+YF  FG+I    +  D +    RGFG
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFG 284


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
 Frame = +1

Query: 88  DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           ++ EP    KLF+G L Y     +L   +EQ G +    V+ + +T +S+GFGF+T S  
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201

Query: 268 HMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVK----KLFVAGLKQDIEEED 432
              + A +    + ++GR++   +A PR    RPE +  V     +++V  L  D++   
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRG--SRPERAPRVYEPAFRVYVGNLPWDVDNGR 259

Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L + FS  G +V   VV D+ETG+ RGFG
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFG 288



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 18/57 (31%), Positives = 37/57 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++++G L +   +  L++ + + G++V+  V+ D +T RS+GFGF+T S    ++EA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301


>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RKLFI GL   TT   L+  +  +G++ + +V+ D  T +SKG+GF+T+        A  
Sbjct: 75  RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134

Query: 292 NRPHKIDGRI-VEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468
               KIDGR+ V  + A   +      A  +++K++VA +  D+  + L  +F  +G++ 
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194

Query: 469 SVSVVTDKETGKKRGF 516
              +  DK TGK RGF
Sbjct: 195 EGPLGFDKVTGKSRGF 210



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = +1

Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++  + +KLF+ GL  D   E LR  FS++G++    V+ DK TGK +G+G
Sbjct: 69  DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RK+++  + +      L   +  +G++ +  +  D  T +S+GF    Y  A     A  
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226

Query: 292 NRPHKIDGR 318
           +    IDG+
Sbjct: 227 DPVKVIDGK 235


>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 81.0 bits (191), Expect = 4e-16
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RKLFI GL   TT   L+  +  +G++ + +V+ D  T +SKG+GF+T+        A  
Sbjct: 75  RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134

Query: 292 NRPHKIDGRI-VEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468
               KIDGR+ V  + A   +      A  +++K++VA +  D+  + L  +F  +G++ 
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194

Query: 469 SVSVVTDKETGKKRGF 516
              +  DK TGK RGF
Sbjct: 195 EGPLGFDKVTGKSRGF 210



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = +1

Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++  + +KLF+ GL  D   E LR  FS++G++    V+ DK TGK +G+G
Sbjct: 69  DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RK+++  + +      L   +  +G++ +  +  D  T +S+GF    Y  A     A  
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226

Query: 292 NRPHKIDGR 318
           +    IDG+
Sbjct: 227 DPVKVIDGK 235


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 34/84 (40%), Positives = 57/84 (67%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P +++K+F+GGL    T++  K+++ Q+G I DVVVM D +T+R +GFGFI+Y     VD
Sbjct: 29  PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 88

Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351
           +      H+++G++VE   AVP++
Sbjct: 89  KVLQKTFHELNGKMVEVKLAVPKD 112



 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KK+FV GL   + E + ++YF+ FG I  V V+ D  T + RGFG
Sbjct: 33  KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 77


>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
           RNA binding protein GI:18181938 from (Arabidopsis
           thaliana); contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain 15450911 gb AY054536.1
          Length = 360

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 35/90 (38%), Positives = 54/90 (60%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T+K+F+GGL   TT+   K ++E++G   DVVVM D  T R +GFGF+TY     V+   
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178

Query: 289 NNRPHKIDGRIVEPIRAVPREEIKRPEASA 378
            +  H++  + VE  RA+P+E I+    +A
Sbjct: 179 QSNFHELSDKRVEVKRAIPKEGIQSNNGNA 208



 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 24/159 (15%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLF+GG+   T++ +LK+++ ++G +++ VV K+  T + +GFGF+ ++    V +A  +
Sbjct: 7   KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66

Query: 295 RPHKIDGRIVEPIRAVPREEI-KRP------------------EASAT-----VKKLFVA 402
             H I G+ V+  +A+ + E+ ++P                  E S+       KK+FV 
Sbjct: 67  -THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVG 125

Query: 403 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           GL  +  EE+ + YF  FG    V V+ D  T + RGFG
Sbjct: 126 GLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFG 164


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T  L++G LD   TDS L E + Q G++V V V +D  T+RS G+G++ Y+       A 
Sbjct: 44  TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103

Query: 289 NNRPH-KIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
           N      ++GR +  + +V    +++    + V  +F+  L + I+ + L E FS FG I
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRK----SGVGNIFIKNLDKSIDHKALHETFSAFGPI 159

Query: 466 VSVSVVTDKETGKKRGFG 519
           +S  V  D  +G+ +G+G
Sbjct: 160 LSCKVAVD-PSGQSKGYG 176



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEA 285
           +++  L    +D  L + + ++G     V+M+D + K SKGFGF+ +      A  VD  
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284

Query: 286 QNN----------RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435
                        +  K   R  E ++    + +K     +    L+V  L + + ++ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETE-LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343

Query: 436 REYFSTFGNIVSVSVVTDKETGKKRGFG 519
           RE+F+ FG I S  V+ D  +G  RG G
Sbjct: 344 REHFAPFGTITSCKVMRD-PSGVSRGSG 370


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L++G LD+  TDS L +++ +  ++V V V +D  T  S G+G++ YS     ++A    
Sbjct: 48  LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query: 298 PHK-IDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
            +  ++G+++  I    R+   R    + V  LFV  L + ++ + L E FS  G IVS 
Sbjct: 108 NYSYLNGKMIR-ITYSSRDSSAR---RSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163

Query: 475 SVVTDKETGKKRGFG 519
            V TD   G+ RG+G
Sbjct: 164 KVATD-HMGQSRGYG 177



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDEAQ 288
           +++  L   TTD  LK  + Q+G I   VVM+D   K S+ FGF+ +     A    EA 
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285

Query: 289 NNRPHKIDGRIVEPIRAVPREEI---KRPEASAT-------VKKLFVAGLKQDIEEEDLR 438
           N +        V   +     E+   +R E  ++          L+V  L   + +E LR
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345

Query: 439 EYFSTFGNIVSVSVVTDKE-TGKKRGF 516
           E F+ FG I S  V+ D   T K  GF
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGF 372



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 27/92 (29%), Positives = 44/92 (47%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L++  LD   TD  L+E + ++G I    VM+DP +  SKG GF+ +S A       N  
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388

Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVKKL 393
             K+ G     +    R+E +R +  A   ++
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQM 420


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = +1

Query: 76  ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255
           E G++        K+F+GGL + T   +++ ++EQ+GEIV+ VV+ D  T RSKG+GF+T
Sbjct: 10  EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69

Query: 256 YSQAHMVDEAQNNRPHKIDGR 318
           + +A     A  N    IDGR
Sbjct: 70  FKEAEAAMRACQNMNPVIDGR 90



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           K+FV GL  + + + +R YF  FG IV   V+TDK TG+ +G+G
Sbjct: 23  KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66


>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 451

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RK+F+ GL + T   SL + ++Q+GEI D   + D  + +SKG+GFI +        A  
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187

Query: 292 NRPHKIDGRI-------VEPIRAVP-REEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447
               KI  R+       + P++  P     +        +K++V+ +  DI+ + L E+F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247

Query: 448 STFGNIVSVSVVTDKETGKKRGF 516
           S FG I    +  DK TG+ +GF
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGF 270



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 100 PEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           PE+  RK+++  +        L EF+ ++GEI +  +  D  T R KGF    Y      
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESA 281

Query: 277 DEAQNNRPHK-IDGRIV 324
            +A    PHK  +G ++
Sbjct: 282 KKAL-EEPHKTFEGHVL 297


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           E+P H RK+F+ GL + T   +L E ++Q+GEI D   + D  + +SKG+GFI Y     
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193

Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411
              A      KI  R+               PI A       +   +  T KK++V+ + 
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253

Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
            +++ + L  +FS FG I    +  DK TG+ +GF
Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +K+FV GL  D + E L E F  +G I     V DK +GK +G+G
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 91  YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           +   EHT +K+++  +        L  F+ ++GEI +  +  D  T R KGF    Y  +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296

Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342
                A    PHK  +G I+   +A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           E+P H RK+F+ GL + T   +L E ++Q+GEI D   + D  + +SKG+GFI Y     
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193

Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411
              A      KI  R+               PI A       +   +  T KK++V+ + 
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253

Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
            +++ + L  +FS FG I    +  DK TG+ +GF
Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +K+FV GL  D + E L E F  +G I     V DK +GK +G+G
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 91  YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           +   EHT +K+++  +        L  F+ ++GEI +  +  D  T R KGF    Y  +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296

Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342
                A    PHK  +G I+   +A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           E+P H RK+F+ GL + T   +L E ++Q+GEI D   + D  + +SKG+GFI Y     
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193

Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411
              A      KI  R+               PI A       +   +  T KK++V+ + 
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253

Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
            +++ + L  +FS FG I    +  DK TG+ +GF
Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +K+FV GL  D + E L E F  +G I     V DK +GK +G+G
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = +1

Query: 91  YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           +   EHT +K+++  +        L  F+ ++GEI +  +  D  T R KGF    Y  +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296

Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342
                A    PHK  +G I+   +A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291
           +L++G L Y  T S L + + + G +VDV ++ D  T RS+GFGF+T        EA Q 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 292 NRPHKIDGRIVE-PIRAVPR---EEIKRPEASATVK-------KLFVAGLKQDIEEEDLR 438
               +I GR V+     VPR    E+ R +     +       K++   L  ++  + L+
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + F     ++   V+ ++ TG+ RGFG
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFG 263



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +1

Query: 55  ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234
           ++  K  ++   Y +  H  K++ G L +  T   LK+ +     ++   V+ +  T RS
Sbjct: 202 VMRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259

Query: 235 KGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPREE 354
           +GFGFI++  A  V  A       +++GR +    A  RE+
Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
 Frame = +1

Query: 82  GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           G    E      +++GGLD + ++  L E + Q G +V+V V KD  T   + +GFI Y 
Sbjct: 15  GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYR 74

Query: 262 QAHMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438
                D A +     K+ G+   PIR     + K+  +      LF+  L  D++E+ L 
Sbjct: 75  SEEDADYAIKVLNMIKLHGK---PIRVNKASQDKK--SLDVGANLFIGNLDPDVDEKLLY 129

Query: 439 EYFSTFGNIVS-VSVVTDKETGKKRGFG 519
           + FS FG I S   ++ D +TG  RGFG
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFG 157



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 64  MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV-DVVVMKDPKTKRSKG 240
           ++ +++  D +  +    LFIG LD    +  L + +  +G I  +  +M+DP T  S+G
Sbjct: 96  IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155

Query: 241 FGFITYSQAHMVDEA 285
           FGFI+Y      D A
Sbjct: 156 FGFISYDSFEASDAA 170


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S +G D  +   T KLF+G +    T+  ++ ++EQ G +++V ++KD +T + +G  F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166

Query: 253 TYSQAHMVDEAQNNRPHKID-GRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429
            Y+ +   D A     ++I       P++ V   + +R        KLFV  L +   E+
Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQ-VRYADGERERIGTLEFKLFVGSLNKQATEK 225

Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++ E F  FG++  V ++ D E  + RG G
Sbjct: 226 EVEEIFLQFGHVEDVYLMRD-EYRQSRGCG 254



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 35/49 (71%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           KLF+G L+ + T+  ++E + Q+G + DV +M+D + ++S+G GF+ YS
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S +G D  +   T KLF+G +    T+  ++ ++EQ G +++V ++KD +T + +G  F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166

Query: 253 TYSQAHMVDEAQNNRPHKID-GRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429
            Y+ +   D A     ++I       P++ V   + +R        KLFV  L +   E+
Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQ-VRYADGERERIGTLEFKLFVGSLNKQATEK 225

Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++ E F  FG++  V ++ D E  + RG G
Sbjct: 226 EVEEIFLQFGHVEDVYLMRD-EYRQSRGCG 254



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/49 (38%), Positives = 35/49 (71%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           KLF+G L+ + T+  ++E + Q+G + DV +M+D + ++S+G GF+ YS
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294
           +++  L   TTD  LK  + ++G+I   VVMKD + K SKGFGF+ +  A     A ++ 
Sbjct: 31  VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 89

Query: 295 RPHKID------GRIVE------PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438
             HK D      GR  +       +R    + +K          L+V  L   I +E L+
Sbjct: 90  NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149

Query: 439 EYFSTFGNIVSVSVVTDKE-TGKKRGF 516
           E FS FG + S  V+ D   T K  GF
Sbjct: 150 EIFSPFGTVTSSKVMRDPNGTSKGSGF 176


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           E+PE+  + FIGGL + T+D  L++ +E++G +V+  V+ D  + RS+GFGFIT+ +   
Sbjct: 3   EDPEY--RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 274 VDEA-QNNRPHKIDGRIVEPIRAVPRE 351
           +DEA        +DGR +   +A P +
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQ 87


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 47/68 (69%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLF+GGL + T DSSLK+ +  +GE+ +  V+ D +T RS+GFGF+++S     +++ NN
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91

Query: 295 RPHKIDGR 318
              ++DG+
Sbjct: 92  AIKEMDGK 99



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLFV GL    ++  L++ F++FG +   +V+ D+ETG+ RGFG
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 79


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 47/68 (69%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLF+GGL + T DSSLK+ +  +GE+ +  V+ D +T RS+GFGF+++S     +++ NN
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91

Query: 295 RPHKIDGR 318
              ++DG+
Sbjct: 92  AIKEMDGK 99



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLFV GL    ++  L++ F++FG +   +V+ D+ETG+ RGFG
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 79


>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 285

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 43/68 (63%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   +L++ +EQ+GEI++ VV+ D  T RSKG+GF+T+        A  +
Sbjct: 25  KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 85  PTPIIDGR 92



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +1

Query: 325 EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 504
           +P+       +  P    T  K+FV GL  + + E LR++F  +G I+   V+ DK TG+
Sbjct: 4   QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63

Query: 505 KRGFG 519
            +G+G
Sbjct: 64  SKGYG 68


>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 347

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 74  ATPVIDGR 81



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K+FV GL  +  +E ++++F  FG I+   V+TDK +G+ +G+G
Sbjct: 11  TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57


>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 242

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 74  ATPVIDGR 81



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K+FV GL  +  +E ++++F  FG I+   V+TDK +G+ +G+G
Sbjct: 11  TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57


>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 249

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 45/68 (66%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   ++K+ +EQ+GEI++ VV+ D  + RSKG+GF+T+ +A     A  +
Sbjct: 14  KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 74  ATPVIDGR 81



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K+FV GL  +  +E ++++F  FG I+   V+TDK +G+ +G+G
Sbjct: 11  TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 29/70 (41%), Positives = 42/70 (60%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+++ GL + T    L  ++E++GEIV   V+ D  T+RSKGFGF+T+ +      A  N
Sbjct: 10  KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69

Query: 295 RPHKIDGRIV 324
             H IDGR V
Sbjct: 70  PNHTIDGRTV 79



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           K++VAGL      E L  YF  FG IV   VV D  T + +GFG
Sbjct: 10  KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFG 53


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/68 (41%), Positives = 44/68 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   SL+ ++EQ+G+IV+ VV+ D  + RSKG+GF+T+       +A  +
Sbjct: 8   KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 68  PAPVIDGR 75



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K+FV GL  +  +  LR YF  FG+IV   V+TDK +G+ +G+G
Sbjct: 5   TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYG 51


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 28/68 (41%), Positives = 44/68 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   SL+ ++EQ+G+IV+ VV+ D  + RSKG+GF+T+       +A  +
Sbjct: 8   KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 68  PAPVIDGR 75



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 21/47 (44%), Positives = 30/47 (63%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K+FV GL  +  +  LR YF  FG+IV   V+TDK +G+ +G+G
Sbjct: 5   TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYG 51


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 22/157 (14%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291
           KLF+G L +    + L + +E  G +  V V+ D  T RS+GFGF+T S    V+  AQ 
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 292 NRPHKIDGRIVEPIRAVP---REE--IKRPEAS----------------ATVKKLFVAGL 408
              +++DGR +      P   RE+   + P +S                 +  +++V  L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211

Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
              +++  L   FS  G +V   V+ D+++G+ +GFG
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 248



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291
           ++++G L +   D +L+  + + G++V+  V+ D  + RSKGFGF+TY  +  V  A ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264

Query: 292 NRPHKIDGRIVEPIRAVPR 348
                +DGR +    A  R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 44/68 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T    ++ ++EQ+GEI++ V++ D  T +SKG+GF+T+ ++     A  +
Sbjct: 18  KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 78  PNPVIDGR 85



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + P    T  K+FV GL  +   +++R YF  FG I+   ++TDK TGK +G+G
Sbjct: 8   RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 44/68 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T    ++ ++EQ+GEI++ V++ D  T +SKG+GF+T+ ++     A  +
Sbjct: 18  KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 78  PNPVIDGR 85



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + P    T  K+FV GL  +   +++R YF  FG I+   ++TDK TGK +G+G
Sbjct: 8   RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           K+F+G L +RTT   L+ ++EQ+G++VD  V+ +    RSKG+GFIT+      V   QN
Sbjct: 13  KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72

Query: 292 NRPHKIDGR 318
           ++P  IDGR
Sbjct: 73  SKP-IIDGR 80



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 382 VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           V K+FV  L      +DLR YF  FG +V  +VV++   G+ +G+G
Sbjct: 11  VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYG 56


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 29/68 (42%), Positives = 46/68 (67%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           KLFIGG+ Y   + SL+E + ++GE+VD  V+ D +T RS+GFGF+T++ +    EA ++
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSS----EAASS 96

Query: 295 RPHKIDGR 318
               +DGR
Sbjct: 97  AIQALDGR 104



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLF+ G+   ++E+ LRE F+ +G +V   V+ D+ETG+ RGFG
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84


>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 374

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
 Frame = +1

Query: 73  SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
           S   DD E P   T+KLFI GL + T++ +L+  +E +GE+V+V ++ D  +KRSKG+ F
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327

Query: 250 ITYSQAHMVDEAQNNRPHKIDGRIV 324
           + Y+     +EA      +++G+I+
Sbjct: 328 LEYT----TEEAAGTALKEMNGKII 348



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           KKLF+ GL     E+ LR  F  FG +V V ++ DK + + +G+
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           KL+ G L Y    ++L +  + +   E+V+V+  +D  T +S+GF F+T S     +   
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIII 143

Query: 289 NNRPH-KIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
           +N    +  GR ++   A   +  K P    T  KLFV  L   +  E L   F   G++
Sbjct: 144 DNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203

Query: 466 VSVSVVTDKETGKKRGFG 519
           V   VV D +TG+ RG+G
Sbjct: 204 VGARVVFDGDTGRSRGYG 221



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 91  YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQA 267
           Y E EH  KLF+G L +  T  SL   + + G++V   V+ D  T RS+G+GF+ Y S+A
Sbjct: 172 YPETEH--KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229

Query: 268 HMVDEAQNNRPHKIDGRIV 324
            M    ++    +++GR +
Sbjct: 230 EMETALESLDGFELEGRAI 248



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           +A   KL+   L  +++   L +    F N   V V+ +++TG+ RGF
Sbjct: 81  AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGF 128


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 26/76 (34%), Positives = 47/76 (61%)
 Frame = +1

Query: 91  YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAH 270
           + +  HT K+F+GGL + T    ++ +++Q+GEI++ V++ D  T +SKG+GF+T+  + 
Sbjct: 11  FGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69

Query: 271 MVDEAQNNRPHKIDGR 318
               A  +    IDGR
Sbjct: 70  SATRAVADPNPVIDGR 85



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 32/54 (59%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + P    T  K+FV GL  +   +++R YF  FG I+   ++TDK TGK +G+G
Sbjct: 8   RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
 Frame = +1

Query: 97  EPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           +PE   R +F   +  + T+  + EF+ + G++ DV ++ D  ++RSKG G+I +     
Sbjct: 162 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 221

Query: 274 VDEAQNNRPHKIDGRIVEPIRAVPREEIKR--PEASATV-------KKLFVAGLKQDIEE 426
           V  A         G   +P+   P E  K      S TV       +KL+V  L  ++ E
Sbjct: 222 VPMAIALSGQLFLG---QPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSE 278

Query: 427 EDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
             LR+ F  FG +  V +  D ETG+ +GFG
Sbjct: 279 LQLRQIFEAFGPVELVQLPLDPETGQCKGFG 309



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ- 288
           RKL++G L +  ++  L++ +E +G +  V +  DP+T + KGFGFI + Q      AQ 
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324

Query: 289 -NNRPHKIDGRIVE 327
             N   +I GR ++
Sbjct: 325 ALNGKLEIAGRTIK 338


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           ++++G L   TTD  L+E +  +G +VD +VM+D  T RS+GFGF+TYS     + A + 
Sbjct: 4   RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63

Query: 295 RPHK-IDGRIV 324
              K ++GR V
Sbjct: 64  MDGKELNGRRV 74



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +++V  L     ++ LRE FS +GN+V   V+ D+ T + RGFG
Sbjct: 4   RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFG 47


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           ++ LF G L Y+   S ++ F+++ GE+VDV +         KG+G I ++      +A 
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS-FKGYGHIEFASPEEAQKAL 441

Query: 289 NNRPHKIDGRIVE----PIRAVPREEIK-RPEASATVKKLFVAGLKQDIEEED----LRE 441
                 + GR V       R  PR     R    +  + ++V G    + E++    LR 
Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRS 501

Query: 442 YFSTFGNIVSVSVVTDKETGKKRGF 516
           +FS  G +  V V TD+ETG  RGF
Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGF 526



 Score = 30.3 bits (65), Expect = 0.82
 Identities = 23/97 (23%), Positives = 38/97 (39%)
 Frame = +1

Query: 61  NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240
           N  P   G+  +      + F   L        L+  + + GE+  V V  D +T  S+G
Sbjct: 466 NSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRG 525

Query: 241 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPRE 351
           F +I  +     DEA      +I G  +    + PR+
Sbjct: 526 FAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRD 560


>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
           similar to glycine-rich RNA-binding protein from
           {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
           sativum]; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 155

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL   T    LKE +  +G+IVD VV+ D ++  S+GFGF+TY    + + A   
Sbjct: 37  KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96

Query: 295 RPHK-IDGRIV 324
             +K +DGRI+
Sbjct: 97  MQNKELDGRII 107



 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 24/49 (48%), Positives = 30/49 (61%)
 Frame = +1

Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           S T  K+FV GL    + E L+E F +FG IV   VV D+E+G  RGFG
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFG 80


>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           is the location of EST 197B1T7 , gb|AA597386
          Length = 274

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/68 (38%), Positives = 42/68 (61%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   +L+  ++Q+G+I++ VV+ D  T RSKG+GF+T+        A  +
Sbjct: 25  KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84

Query: 295 RPHKIDGR 318
               IDGR
Sbjct: 85  PTPIIDGR 92



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%)
 Frame = +1

Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +  P    T  K+FV GL  + + E LR +F  +G+I+   V+TDK TG+ +G+G
Sbjct: 14  LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 27/58 (46%), Positives = 40/58 (68%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           KLFIGGL + TT+  L E + + G++V+  ++ D  + RSKGFGF+T++ A   DEAQ
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           + F+GGL + T D  L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  + 
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 292 NRPHKIDGRIV 324
               ++DGR++
Sbjct: 67  MNGKELDGRVI 77



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + FV GL     +EDL+  FS FG+++   ++ D+E+G+ RGFG
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           + F+GGL + T D  L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  + 
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 292 NRPHKIDGRIV 324
               ++DGR++
Sbjct: 67  MNGKELDGRVI 77



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + FV GL     +EDL+  FS FG+++   ++ D+E+G+ RGFG
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           + F+GGL + T D  L+  + Q+G+++D  ++ D ++ RS+GFGF+T+  +  M D  + 
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 292 NRPHKIDGRIV 324
               ++DGR++
Sbjct: 67  MNGKELDGRVI 77



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + FV GL     +EDL+  FS FG+++   ++ D+E+G+ RGFG
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG---FITYSQAHMVD 279
           T  L++G L    T+  L + + ++  +  V + KD  + RS  +G   F++   A++  
Sbjct: 23  TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459
           E +NN    ++G+++  + +V   + +R      V  +FV  L + +    L++ F  FG
Sbjct: 83  EKKNNS--LLNGKMIRVMWSVRAPDARRNG----VGNVFVKNLPESVTNAVLQDMFKKFG 136

Query: 460 NIVSVSVVTDKETGKKRGFG 519
           NIVS  V T  E GK RG+G
Sbjct: 137 NIVSCKVAT-LEDGKSRGYG 155



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
 Frame = +1

Query: 85  DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           D  +  E    L++  LD   ++  L+E + ++G+IV + + KD + +  +G+ F+ +  
Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDN 250

Query: 265 AHMVDEAQNN-RPHKIDGRIVEPIRA---VPREEIKRPEAS---------ATVKKLFVAG 405
                 A       K   + +   RA     RE++ R +           A V  ++V  
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKN 310

Query: 406 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +   + EE+LR++FS  G I S  ++ D E GK +GFG
Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFG 347



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 34/128 (26%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVD--VVVMKDPKTKRSKGFGFITYSQAHMVDEA-Q 288
           +F+  L    T++ L++ ++++G IV   V  ++D K   S+G+GF+ + Q      A Q
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK---SRGYGFVQFEQEDAAHAAIQ 170

Query: 289 NNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468
                 +  + +   + + + +  +PE   T   L++  L  D+ E+ LRE F+ FG IV
Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDRVKPEEKYT--NLYMKNLDADVSEDLLREKFAEFGKIV 228

Query: 469 SVSVVTDK 492
           S+++  D+
Sbjct: 229 SLAIAKDE 236



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           +++  ++   T+  L++ + Q G I    +M D K K SKGFGF+ +S
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352


>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
           to RNA-binding protein GB:S46286 from [Nicotiana
           sylvestris]
          Length = 289

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GG+ Y T +  L+E + ++GE+VD  ++ D +T RS+GF F+T++       A   
Sbjct: 35  KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94

Query: 295 RPHKIDGRIVEPIRAVPR 348
               + GR +    A  R
Sbjct: 95  DGQDLHGRRIRVNYATER 112



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           K+FV G+    +E  LRE FS +G +V   ++ D+ETG+ RGF
Sbjct: 35  KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGF 77


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 26/69 (37%), Positives = 43/69 (62%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+++GGL + T    L  F++++GEI+ V V+ D +T RS+G+GF+T+  A     A  +
Sbjct: 14  KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73

Query: 295 RPHKIDGRI 321
               I+GRI
Sbjct: 74  PNPTIEGRI 82



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           T  K++V GL     +E L  +F  FG I+ V+VV D+ET + +G+G
Sbjct: 11  TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYG 57


>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
           SP|P10979 Glycine-rich RNA-binding, abscisic
           acid-inducible protein {Zea mays}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 142

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +LF+ GL   TT+  L++ +  +G++VD  V+ D  + RSKGFGF+TY+     ++A+  
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 295 RPHK-IDGRIVEPIRAVPREEIKRP 366
              K +DG ++    A PRE  +RP
Sbjct: 95  MNAKFLDGWVIFVDPARPREP-RRP 118



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 19/50 (38%), Positives = 35/50 (70%)
 Frame = +1

Query: 370 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++ T  +LFV+GL +    E L++ F++FG +V   V+TD+++G+ +GFG
Sbjct: 29  STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
 Frame = +1

Query: 67  KPSESGDDYEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
           K  +  +   +PE   R +F   +  R T+  + EF+ + G++ DV ++ D  ++RS+G 
Sbjct: 166 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 225

Query: 244 GFITY------------SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387
           G++ +            S   ++ +    +P + +  +V+   A           S   +
Sbjct: 226 GYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 285

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +L+V  L  ++ E+DLR+ F +FG++  V V  D ETG  +GFG
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFG 328



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R+L++G L    ++  L++ +E +G +  V V +D +T   KGFGF+ +++      A N
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN 343

Query: 292 -NRPHKIDGRIVEPIRAVPREEIKRPEASAT 381
            N   +I GR ++      + E+  PEA  T
Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEV--PEAGQT 372


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           SESG     P  T  +++  L    TD  LK+ + ++G+I   VVMKD ++  S+ FGF+
Sbjct: 216 SESG---AVPSFTN-VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFV 270

Query: 253 TY---SQAHMVDEAQN-----------NRPHKIDGRIVEPIRAVPREEIKRPEASATVKK 390
            +     A +  E  N            R  K   R  E  R   +E I R E       
Sbjct: 271 NFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE-KLQGSN 329

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L++  L   + +E L+E FS +GN+ S  V+ + + G  RGFG
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFG 371



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294
           +FI  LD    + +L E +  +G I+   V  D    RSKG+GF+ + +      A +  
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192

Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASA--TVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468
               ++ + V     V R++  R E+ A  +   ++V  L ++I +++L++ F  +G+I 
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 252

Query: 469 SVSVVTDKETGKKRGFG 519
           S  V+ D ++G  R FG
Sbjct: 253 SAVVMKD-QSGNSRSFG 268



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 26/93 (27%), Positives = 44/93 (47%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L++  LD    D  LKE + ++G +    VM + +   S+GFGF+ YS       A    
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEM 388

Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396
             K+ GR  +P+     +  ++ E  A ++ LF
Sbjct: 389 NGKMIGR--KPLYVALAQ--RKEERQAHLQSLF 417


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291
           ++F+GGL    TD  L+  + ++G+I+D  +M +  T RS+GFGFIT++    +DE+ + 
Sbjct: 8   RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67

Query: 292 NRPHKIDGRIVEPIRAVPR 348
                   R++   RA P+
Sbjct: 68  MHGRDFGDRVISVNRAEPK 86



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 17/44 (38%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++FV GL  ++ + DL   FS FG+I+   ++ +++TG+ RGFG
Sbjct: 8   RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFG 51


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           + F+GGL + T D +L+  + Q+G+++D  ++ D +T RS+GFGF+T+  +  M D  + 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 292 NRPHKIDGRIV 324
                +DGR +
Sbjct: 69  MNGQDLDGRSI 79



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 370 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           AS  V+ + FV GL    ++  L   F+ +G+++   ++ D+ETG+ RGFG
Sbjct: 2   ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFG 52


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           + F+GGL + T D +L+  + Q+G+++D  ++ D +T RS+GFGF+T+  +  M D  + 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 292 NRPHKIDGRIV 324
                +DGR +
Sbjct: 69  MNGQDLDGRSI 79



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 370 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           AS  V+ + FV GL    ++  L   F+ +G+++   ++ D+ETG+ RGFG
Sbjct: 2   ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFG 52


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +F+G L    +D+ L E F E++  +    V+ D  T RSKG+GF+ +   +   +A   
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258

Query: 295 RPH-KIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 429
               K   R +    A PR+               + RPE       +FV GL   + +E
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318

Query: 430 DLREYFSTFGNIVSVSVVTDKETG 501
           DL++ F+ FG IVSV +   K  G
Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCG 342



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           + +++G L +   ++ L   +    E  IV V V+++     S+G+GF+ +    + D+ 
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160

Query: 286 QNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS-T 453
                        +P R   A      KR E +     +FV  L  D+ +  L E FS  
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220

Query: 454 FGNIVSVSVVTDKETGKKRGFG 519
           + ++ +  VV D  TG+ +G+G
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYG 242



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           +F+GGLD   TD  LK+ + ++GEIV V      K    KG GF+ +      +EA
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 355


>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 153

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 23/49 (46%), Positives = 37/49 (75%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           KLFIGGL + T D+SL++ +  +G++VD  V+ D +T RS+GFGF+ ++
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLF+ GL    ++  LR+ F+ FG++V   V+ D+ETG+ RGFG
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFG 79


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 158

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 23/49 (46%), Positives = 37/49 (75%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           KLFIGGL + T D+SL++ +  +G++VD  V+ D +T RS+GFGF+ ++
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84



 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLF+ GL    ++  LR+ F+ FG++V   V+ D+ETG+ RGFG
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFG 79


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           +FI  LD    + +L E +  +G I+   V  D  T RSKG+GF+ + +    +E+    
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAA 192

Query: 298 PHKIDGRIVEPIRA-----VPREEIKRPEASATVK--KLFVAGLKQDIEEEDLREYFSTF 456
             K++G ++   +      + R+E  R E + T +   ++V  L ++I E++LR+ F  F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252

Query: 457 GNIVSVSVVTDKETGKKRGFG 519
           G ++S +VV   ++G  R FG
Sbjct: 253 G-VISSAVVMRDQSGNSRCFG 272



 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 29/103 (28%), Positives = 45/103 (43%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           E      L++  LD    D  LKE + ++G +    VM +P+   S+GFGF+ YS     
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEA 385

Query: 277 DEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAG 405
             A +    K+ GR    I    R+E +R    A   ++   G
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPG 428


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291
           KL++ GL +RTT+ +L++ +EQ+G ++ + ++ D    R KGF F+ Y ++   +   Q 
Sbjct: 78  KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137

Query: 292 NRPHKIDGRIVEPIRAVPREEIKR 363
                +DGR++    A  R ++ R
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSR 161



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 364 PEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           P +S+  K KL+V+GL     E+ LR+ F  FGN++ +++V DK   + +GF
Sbjct: 69  PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGF 120


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +LF+  L   TTD SL++ +  +G+I +  +++D +T+R KGFGFIT+       +A  +
Sbjct: 8   QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67

Query: 295 RPHKI-DGRIVEPIRAVPREEIK 360
              KI DGR++    A   EE++
Sbjct: 68  LDGKIVDGRLIFVEVAKNAEEVR 90



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +LFV+ L     ++ LR+ FS FG I    ++ D ET + +GFG
Sbjct: 8   QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFG 51


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/68 (33%), Positives = 43/68 (63%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+F+GGL + T   ++ + + ++G+I++ V++ D  T+RSKG+GF+T+  A     A  +
Sbjct: 18  KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77

Query: 295 RPHKIDGR 318
               I+GR
Sbjct: 78  STPIINGR 85



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           K+FV GL  D  +E + ++F  +G+I+   +++DK T + +G+G
Sbjct: 18  KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282
           +  + L++G L +   ++ L   +   GE+  V V+++  T +S+G+GF+ +      +E
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164

Query: 283 AQNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS- 450
              N    +     +P R   A      KR   +     +FV  L  D+ +  L E FS 
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224

Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519
            + ++ S  VV D  TG+ +G+G
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYG 247



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 30/158 (18%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ-- 288
           +F+G L    TD  L E F +++  +    V+ D  T RSKG+GF+ +   +    A   
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263

Query: 289 ------NNRPHKIDGRIVEPIRAVPREEIKRPEA---------------------SATVK 387
                 +NR  ++   I  P RA+  ++    +A                      +T  
Sbjct: 264 MNGAYCSNRQMRVG--IATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
            +FV G+  D+ +EDLR+ FS FG +VSV +   K  G
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           +F+GG+D    D  L++ + Q+GE+V V      K    KG GF+ ++     ++A
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSV------KIPVGKGCGFVQFADRKSAEDA 372


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           ++ LF   L +    + ++ F+++ GE+VDV    +      +GFG + ++ +    +A 
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355

Query: 289 NNRPHKIDGRIVEPIRAVPR-EEIKRPEAS------------ATVKKLFVAGLKQDIEEE 429
                 + GR +    A  R E  +RP  +               KK+FV G    + E+
Sbjct: 356 EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSED 415

Query: 430 D----LREYFSTFGNIVSVSVVTDKETGKKRG 513
           D    LRE+FS+ G I +VSV  D++TG  +G
Sbjct: 416 DIKNTLREHFSSCGEIKNVSVPIDRDTGNSKG 447



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           +K+F+ G D   ++    ++L+E +   GEI +V V  D  T  SKG  ++ +S+
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
 Frame = +1

Query: 70  PSESGDDYEEP---EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240
           P      Y  P   E  R L+IG L Y   ++ L   + Q GE+V V V+++  T + +G
Sbjct: 7   PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG 66

Query: 241 FGFITY-SQAHMVDEAQNNRPHKIDG-RIVEPIRAVPREEIKRPEASATVKKLFVAGLKQ 414
           +GFI + S A      Q     ++ G  +   +        ++ +A      +FV  L  
Sbjct: 67  YGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPD-HSIFVGDLAP 125

Query: 415 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFG 519
           D+ +  L+E F   + ++    VVTD  TG+ +G+G
Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYG 161



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
 Frame = +1

Query: 58  LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231
           LN     SG   +  P+H+  +F+G L    TD  L+E F   +  +    V+ DP T R
Sbjct: 99  LNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156

Query: 232 SKGFGFITYSQAHMVDEAQ--------NNRPHKIDG---------------RIVEPIR-- 336
           SKG+GF+ +++    + A         + RP +I                 + V P+   
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216

Query: 337 ---AVP-REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
              A P +  +  PE+  T   + VA L Q++ EE+L++ FS  G ++ V +   K  G
Sbjct: 217 SAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYG 275


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 12/151 (7%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282
           + +  +++  L    TD  L   + Q+G +  VVVM+D    RS+GFGF+ +       +
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKK 257

Query: 283 AQNNR-PHKIDGRIVEPIRAVPREE----IKRPEASATVKK-------LFVAGLKQDIEE 426
           A  +    ++  + +   +A+ ++E    +K+  +   + K       L+V  L + + E
Sbjct: 258 AMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317

Query: 427 EDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
             LRE F  +G IVS  V+   E G+ +GFG
Sbjct: 318 TRLREIFGCYGQIVSAKVMC-HENGRSKGFG 347



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294
           L++  L     ++ L+E +  +G+IV   VM   +  RSKGFGF+ +S      +A+   
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYL 364

Query: 295 RPHKIDGR-IVEPIRAVPREEIKR 363
               +DG+ IV  +     + IKR
Sbjct: 365 NGFLVDGKPIVVRVAERKEDRIKR 388



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 504
           S+    L+V  L  D+ E+DL + FS    +VSV +  +  TGK
Sbjct: 17  SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGK 60


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +F+G L    +D+ L E F E++  +    V+ D  T RSKG+GF+ +   +   +A   
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260

Query: 295 RPH-KIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 429
               K   R +    A PR+                 R E       +FV GL   + +E
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320

Query: 430 DLREYFSTFGNIVSVSVVTDKETG 501
           DL++ FS FG IVSV +   K  G
Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCG 344



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
 Frame = +1

Query: 187 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIR---AVPREEI 357
           EIV + V+++     S+G+GF+ +    + D+              +P R   A      
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFG 519
           KR E +     +FV  L  D+ +  L E FS  + ++ +  VV D  TG+ +G+G
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYG 244



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           +F+GGLD   TD  LK+ + ++GEIV V      K    KG GF+ +      +EA
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 357


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 258
           E PEHT  +F+G L    TD  L E ++  +  +    V+ D  T RSKG+GF+ +    
Sbjct: 169 EGPEHT--VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226

Query: 259 ----SQAHMVDEAQNNRPHKI-DGRIVEPIRAVP----REEIKRPEASATVKKLFVAGLK 411
               +   M  +  ++RP +       +P+   P      +    E+  T   +FV  + 
Sbjct: 227 EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVD 286

Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
           Q + E+DL+  F  FG +V V +   K  G
Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDE 282
           R L+IG L     ++ L   +   GE     V+++ +   S+G+GFI +   + A    +
Sbjct: 80  RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139

Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFG 459
             N  P     +    +        +R +A      +FV  L  D+ +  L E F + + 
Sbjct: 140 TYNGAPMPSSEQAFR-LNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYS 198

Query: 460 NIVSVSVVTDKETGKKRGFG 519
           ++    VV D+ TG+ +G+G
Sbjct: 199 SVKGAKVVNDRTTGRSKGYG 218



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +1

Query: 58  LNMKPSE----SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 225
           L M+P+      G+  E       +F+G +D   T+  LK  + Q+GE+V V   K P  
Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV---KIPAG 312

Query: 226 KRSKGFGFITYSQAHMVDEA 285
           KR    GF+ Y+     ++A
Sbjct: 313 KRC---GFVQYANRACAEQA 329


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY------SQAHMV 276
           KL++GG+ Y++T+  ++ ++   G I+ V     P+     G  FIT+       +A   
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221

Query: 277 DE-AQNNRPHKIDGRIVEPIRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREY 444
           D  A  +R   I   +     ++PR +      PE      ++++  L  D  E D+R+ 
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281

Query: 445 FSTFGNIVSVSVVTDKETGKKRGF 516
           FS    I SV +  +KETG+ +G+
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGY 304



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +1

Query: 289 NNRPHKIDGRIVEPIRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459
           N  P K +   VE    V   E+    + E      KL+V G+     E+++R YF + G
Sbjct: 126 NKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCG 185

Query: 460 NIVSVSVVTDKETGKKRG 513
            I+ V      E G   G
Sbjct: 186 VIIKVDCKMRPEDGAFSG 203


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/94 (31%), Positives = 46/94 (48%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +F+ GL + TT  +LK  +E +GEI +  V+ D  T R+KGFGF+ +        A  
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222

Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASATVKKL 393
           N   ++  R V  + A P    K  E    V+ +
Sbjct: 223 NPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = +1

Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +  ++ + +FV GL  D   E+L+  F  +G I   SVV DK+TG+ +GFG
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFG 207


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           FV GL QD +E+DL + FS FGN++   ++ D++TGK R FG
Sbjct: 10  FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFG 51



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 16/55 (29%), Positives = 33/55 (60%)
 Frame = +1

Query: 121 FIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           F+ GLD  T +  L + + ++G ++D  ++ D  T +S+ FGF+T+ +   + +A
Sbjct: 10  FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 14/168 (8%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           +++ P  S   +++      +++  L    TD+ LK  + ++GEI   VVMKD + K S+
Sbjct: 101 IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SR 159

Query: 238 GFGFITYSQAH------------MVDEAQNN--RPHKIDGRIVEPIRAVPREEIKRPEAS 375
            FGF+ + +A             +VDE + +  R  +   R  +       E+I R   +
Sbjct: 160 RFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKT 219

Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
                L+V  L   ++   L E FS FG I S  V+     G  +G G
Sbjct: 220 RKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVG 266



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           +F+  LD    +  L + +  +G+++   V +D     SKG+GF+ +     V  A N  
Sbjct: 33  VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTACNFH 91

Query: 298 PHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471
               +G ++  + I   P     + + S     ++V  L +   + DL+  F  FG I S
Sbjct: 92  ----NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147

Query: 472 VSVVTDKETGKKRGFG 519
             V+ D E GK R FG
Sbjct: 148 AVVMKDGE-GKSRRFG 162


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 58  LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234
           L+  P+ S   D E P ++  L++ GL +R T+  L++ + + G++ DV ++ DP T+ S
Sbjct: 28  LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 85

Query: 235 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 324
           +GFGFI+       +    +  H +  GR++
Sbjct: 86  RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 58  LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234
           L+  P+ S   D E P ++  L++ GL +R T+  L++ + + G++ DV ++ DP T+ S
Sbjct: 58  LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 115

Query: 235 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 324
           +GFGFI+       +    +  H +  GR++
Sbjct: 116 RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 146


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           + E +  LF+ GL  RTT   L+  + Q+GE+ D  V+ D  +  SKGFGF+ Y+     
Sbjct: 51  QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110

Query: 277 DEAQNNRPHK-IDGRIVEPIRAVPREE 354
            +       K +DG ++    A PRE+
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQ 137



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = +1

Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           RP+A  +   LFV+GL +    E LR  F+ FG +    VVTD+ +G  +GFG
Sbjct: 49  RPQAEPSTN-LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFG 100


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 19/57 (33%), Positives = 37/57 (64%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           + F+GGL + T D  L+  + Q+G+++D  ++ D ++ RS+GFGF+T+     + +A
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + FV GL     +EDL+  FS FG+++   ++ D+E+G+ RGFG
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P H  ++FIGGL     +  L++  E+ GEI +V +MKD  +  SKG+ F+ +    +  
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171

Query: 280 EA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTF 456
           +A +     +  G+ +            R   S T  +LF+  + ++  E++ R+     
Sbjct: 172 KAIEELHSKEFKGKTI------------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 219

Query: 457 G-NIVSVSVVTD-KETGKKRGF 516
           G  + ++ ++ D   T + RGF
Sbjct: 220 GPGVENIELIKDPTNTTRNRGF 241



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = +1

Query: 70  PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
           P  S +        + L++  +   T+   LKE +++ GE+  +V       KR   FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGF 335

Query: 250 ITYSQ-AHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375
           + Y++ +  +   ++   ++++G+ +E + A P+ E K   +S
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSS 378


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +L++G L +   D +L+  + + G++V+  V+ D  + RSKGFGF+T S +  V +A N+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309

Query: 295 -RPHKIDGRIVEPIRAVPR 348
                +DGR +    A  R
Sbjct: 310 LNGADLDGRQIRVSEAEAR 328



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291
           KLF+G L +    + L + +E  G +  V V+ D  T RS+GFGF+T S A  V+  AQ 
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 292 NRPHKIDGR 318
              ++ +GR
Sbjct: 160 FNGYEFEGR 168



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLFV  L  +++   L + F + GN+  V V+ DK TG+ RGFG
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +L++G L +   D +L+  + + G++V+  V+ D  + RSKGFGF+T S +  V +A N+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317

Query: 295 -RPHKIDGRIVEPIRAVPR 348
                +DGR +    A  R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291
           KLF+G L +    + L + +E  G +  V V+ D  T RS+GFGF+T S A  V+  AQ 
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 292 NRPHKIDGR 318
              ++ +GR
Sbjct: 160 FNGYEFEGR 168



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLFV  L  +++   L + F + GN+  V V+ DK TG+ RGFG
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDE 282
           + L+IG L     ++ +   + Q GE     V+++  T +S+G+GFI   ++S A  V +
Sbjct: 60  KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119

Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFG 459
             N  P     +      A      KR +       +FV  L  ++ +  L + F + +G
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYG 179

Query: 460 NIVSVSVVTDKETGKKRGFG 519
           ++    VV D+ TG+ +G+G
Sbjct: 180 SVKGAKVVLDRTTGRSKGYG 199



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 258
           E P+HT  +F+G L    TD  L + ++  +G +    V+ D  T RSKG+GF+ +    
Sbjct: 150 EGPDHT--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207

Query: 259 ----SQAHMVDEAQNNRPHKI------DGRIVEPIRAVPREEIKRPEASATVKKLFVAGL 408
               +   M  +  + RP +I      +   ++P      +     +       +FV GL
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267

Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
             ++ +++L+  F  FG ++ V +   K  G
Sbjct: 268 DANVTDDELKSIFGQFGELLHVKIPPGKRCG 298



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 29/86 (33%), Positives = 45/86 (52%)
 Frame = +1

Query: 28  NILGLQV**ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 207
           N L +Q     N + + +GD+  +P +T  +F+GGLD   TD  LK  + Q+GE++ V  
Sbjct: 235 NALPMQPAMYQNTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELLHV-- 289

Query: 208 MKDPKTKRSKGFGFITYSQAHMVDEA 285
            K P  KR    GF+ Y+     + A
Sbjct: 290 -KIPPGKRC---GFVQYANKASAEHA 311



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + P +++ VK L++  L+Q ++E  +   F+  G   S  V+ +K TG+  G+G
Sbjct: 51  QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291
           ++F+GGL +  T+  L+  ++++G+I +  +M    T R +GFGFIT++     D+A ++
Sbjct: 13  RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72

Query: 292 NRPHKIDGRIVEPIRAVPR 348
               ++  +++   +A P+
Sbjct: 73  MHGRELGNKVISVNKAEPK 91



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++FV GL  D+ E  L   F  +G I    ++  ++TG+ RGFG
Sbjct: 13  RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFG 56


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291
           ++F+GGL +  T+  L+  ++++G+I +  +M    T R +GFGFIT++     D+A ++
Sbjct: 13  RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72

Query: 292 NRPHKIDGRIVEPIRAVPR 348
               ++  +++   +A P+
Sbjct: 73  MHGRELGNKVISVNKAEPK 91



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++FV GL  D+ E  L   F  +G I    ++  ++TG+ RGFG
Sbjct: 13  RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFG 56


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 20/50 (40%), Positives = 34/50 (68%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           KLFIGGL +   + SLK+ +  +GE+ +V +  D  + RS+GFGF+ +++
Sbjct: 42  KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KLF+ GL   ++E+ L++ FS+FG +  V +  DK +G+ RGFG
Sbjct: 42  KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFG 85


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 31/144 (21%), Positives = 67/144 (46%)
 Frame = +1

Query: 76  ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255
           E   +  E E + KLF+G +    ++S L   ++++  + +V ++KD  T+ S+G  F+ 
Sbjct: 6   EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65

Query: 256 YSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435
                  D+  N   +K   + +    ++ + +    E      KLFV  L +++ E ++
Sbjct: 66  CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122

Query: 436 REYFSTFGNIVSVSVVTDKETGKK 507
           +  FS +G I  + ++   +   K
Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSK 146



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           LF+  + ++  +++L   F +FG ++S  V  DK TG  + FG
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 392



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 337 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           A  +EE +         KLFV  + + + E  L   F  F  +  V+++ DK T   RG
Sbjct: 2   AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 31/144 (21%), Positives = 67/144 (46%)
 Frame = +1

Query: 76  ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255
           E   +  E E + KLF+G +    ++S L   ++++  + +V ++KD  T+ S+G  F+ 
Sbjct: 6   EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65

Query: 256 YSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435
                  D+  N   +K   + +    ++ + +    E      KLFV  L +++ E ++
Sbjct: 66  CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122

Query: 436 REYFSTFGNIVSVSVVTDKETGKK 507
           +  FS +G I  + ++   +   K
Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSK 146



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           LF+  + ++  +++L   F +FG ++S  V  DK TG  + FG
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 393



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 337 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           A  +EE +         KLFV  + + + E  L   F  F  +  V+++ DK T   RG
Sbjct: 2   AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 42/74 (56%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S+    + + +++  +++GG+ +  T+  L   + Q+GEIVDV +++D  T +SKGF F+
Sbjct: 23  SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82

Query: 253 TYSQAHMVDEAQNN 294
            Y        A +N
Sbjct: 83  AYEDQRSTILAVDN 96



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           ++V G+  D+ E DL   FS +G IV V+++ DK TGK +GF
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGF 79


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +F+ G  + TT  +LK  +E +GEI +  V+ D  T R KG+GF+ +       EA  
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467

Query: 292 NRPHKIDGRIV 324
               ++  RIV
Sbjct: 468 RPEKRMYNRIV 478



 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           + +FV G   D  +E+L+  F ++G I   SVV DK+TG+ +G+G
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYG 452


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +1

Query: 61  NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240
           N  P+ +GD Y      + LF+  L+Y +++S +K  +E +G I  V ++ D  T + KG
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 241 FGFITYSQAHMVDEAQNNRP-HKIDGRIV 324
           + FI Y     +  A       KIDGR V
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRV 209



 Score = 35.5 bits (78), Expect = 0.022
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           K LFV+ L  +  E  ++  F ++G I  V +VTD+ T K +G+
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGY 181


>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein from {Daucus
           carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
           napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 185

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +1

Query: 88  DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           D    ++  + F+GGL + T + S++  + ++GE+ D  ++ D +T RSKGF F+T+   
Sbjct: 36  DVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95

Query: 268 HMVDEA-QNNRPHKIDGR 318
             +  A       ++DGR
Sbjct: 96  DSMRTAIDRMNGQELDGR 113



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           + FV GL    +E+ +   F+ FG +    ++ D+ETG+ +GF
Sbjct: 45  RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGF 87


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 273
           +  R L+IG L Y   ++ L   +   GE+V   V+++ +T + +G+GFI   +++ A  
Sbjct: 59  DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118

Query: 274 VDEAQNNRP-HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF- 447
           V +  NN P      ++     A      KR ++      +FV  L  D+ +  L E F 
Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFR 176

Query: 448 STFGNIVSVSVVTDKETGKKRGFG 519
           +++ ++    VV D+ TG+ +G+G
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYG 200



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
 Frame = +1

Query: 58  LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231
           LN     SGD  ++ P++T  +F+G L    TD  L E F   +  +    V+ D  T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195

Query: 232 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387
           +KG+GF+ +S    Q   + E      + RP +I     +      R+  +   A  T  
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255

Query: 388 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
                  +FV GL   + ++ L+  FS +G IV V +   K  G
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 26/63 (41%), Positives = 36/63 (57%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           +P +T  +F+GGLD   TD  LK  + Q+GEIV V   K P  KR    GF+ +S+    
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSEKSCA 309

Query: 277 DEA 285
           +EA
Sbjct: 310 EEA 312



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +1

Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +P  +  ++ L++  L+  ++E  L   F+  G +VS  V+ +K+TG+  G+G
Sbjct: 54  QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106


>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 306

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 273
           +  R L+IG L Y   ++ L   +   GE+V   V+++ +T + +G+GFI   +++ A  
Sbjct: 59  DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118

Query: 274 VDEAQNNRP-HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF- 447
           V +  NN P      ++     A      KR ++      +FV  L  D+ +  L E F 
Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFR 176

Query: 448 STFGNIVSVSVVTDKETGKKRGFG 519
           +++ ++    VV D+ TG+ +G+G
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYG 200



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 16/164 (9%)
 Frame = +1

Query: 58  LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231
           LN     SGD  ++ P++T  +F+G L    TD  L E F   +  +    V+ D  T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195

Query: 232 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387
           +KG+GF+ +S    Q   + E      + RP +I     +      R+  +   A  T  
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255

Query: 388 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
                  +FV GL   + ++ L+  FS +G IV V +   K  G
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           +P +T  +F+GGLD   TD  LK  + Q+GEIV V   K P  KR    GF+ +S+
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSE 305



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +1

Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +P  +  ++ L++  L+  ++E  L   F+  G +VS  V+ +K+TG+  G+G
Sbjct: 54  QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
 Frame = +1

Query: 154 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEP 330
           + L + ++ +G ++ V V ++P+T  S+G G++T    +    A  +    ++ GR +  
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181

Query: 331 IRAVPREEIKR--PEA-SATVKKL---------FVAGLKQDIEEEDLREYFSTFGNIVSV 474
             +V      R  PE  ++T KK+         +V  L    + + LR +FS FG IVS 
Sbjct: 182 RYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVST 241

Query: 475 SVVTDKETGKKRGF 516
            V+ D++TG+ R F
Sbjct: 242 RVLHDRKTGRNRVF 255



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/90 (27%), Positives = 47/90 (52%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282
           E   K+++G L + T    L+  + ++G IV   V+ D KT R++ F F++++     D 
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268

Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEA 372
           A +    + +GR     R + RE I++ E+
Sbjct: 269 ALSFNGTQYEGR-----RIIVREGIEKSES 293



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 21/90 (23%), Positives = 42/90 (46%)
 Frame = +1

Query: 250 ITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429
           ++ S+  ++DE +     K +    +       E +K+P       +L+V  + +  +  
Sbjct: 67  VSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPC----ELYVCNIPRSYDIA 122

Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            L + F  FG ++SV V  + +TG+ RG G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSG 152


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
 Frame = +1

Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282
           +  + L++G L +   ++ L   +    E+  V V+++ +T +S+G+GF+ +      +E
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175

Query: 283 AQNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS- 450
           A  +          +P R   A      KR   +     +FV  L  D+ +  L E F+ 
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235

Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519
            + ++    VV D  TG+ +G+G
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYG 258



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           +F+G L    +D+ L E F  ++  +    V+ D  T RSKG+GF+ +   +    A   
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274

Query: 295 R------PHKIDGRIVEPIRAVPREEIKRPEA----------------SATVKKLFVAGL 408
                    ++   I  P RA    +    +A                 +    +FV GL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334

Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501
             D+ EEDL + FS FG +VSV +   K  G
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVGKGCG 365



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           +F+GGLD   T+  L + +  +GE+V V      K    KG GF+ ++     +EA  N 
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSV------KIPVGKGCGFVQFANRQSAEEAIGNL 382

Query: 298 PHKIDGR 318
              + G+
Sbjct: 383 NGTVIGK 389


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T  L +  + +RTT   L   + ++G++VDV + +D +T  S+GF F+ Y      DEA 
Sbjct: 15  TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70

Query: 289 NNRPHKIDGRIVE 327
           +    ++DGR+V+
Sbjct: 71  HKAVERLDGRVVD 83



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           P+ S T   L V  +      +DL   F+ +G +V V +  D+ TG  RGF
Sbjct: 10  PDISDTYS-LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGF 59


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           T  L +  + +RTT   L   + ++G++VDV + +D +T  S+GF F+ Y      DEA 
Sbjct: 15  TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70

Query: 289 NNRPHKIDGRIVE 327
           +    ++DGR+V+
Sbjct: 71  HKAVERLDGRVVD 83



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           P+ S T   L V  +      +DL   F+ +G +V V +  D+ TG  RGF
Sbjct: 10  PDISDTYS-LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGF 59


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++F+G LD   ++  LK+ +   GE+ +V ++K+P+TK+SKG  F+ ++       A
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271



 Score = 33.5 bits (73), Expect = 0.088
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           ++FV  L +   EEDL++ F   G +  V ++ + +T K +G
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKG 256


>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
           protein
          Length = 116

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294
           LF+ G+ + +T+ +L + + Q+G+++ V V+ D    R KGF ++T+S     ++A    
Sbjct: 23  LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82

Query: 295 RPHKIDGRIV 324
               +DGR+V
Sbjct: 83  NAQLVDGRVV 92



 Score = 35.5 bits (78), Expect = 0.022
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           LFV G+     EE L + FS +G ++ V V+ DK   + +GF
Sbjct: 23  LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGF 64


>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 347

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RK+F+ GL + TT  +L   +E +GEI +  V+ D  T ++KGFGF+ +       EA  
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163

Query: 292 NRPHKIDGR 318
               +I  R
Sbjct: 164 EPKKRILNR 172



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +1

Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++  +   T +K+FV GL  +   E L   F  +G I   +VV DK TGK +GFG
Sbjct: 94  VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFG 148


>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 343

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           RK+F+ GL + TT  +L   +E +GEI +  V+ D  T ++KGFGF+ +       EA  
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163

Query: 292 NRPHKIDGR 318
               +I  R
Sbjct: 164 EPKKRILNR 172



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +1

Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           ++  +   T +K+FV GL  +   E L   F  +G I   +VV DK TGK +GFG
Sbjct: 94  VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFG 148


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 41/76 (53%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           + + P  SG   E P+   ++F+GGL Y  T+S ++E  E +G +    ++KD +T  SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400

Query: 238 GFGFITYSQAHMVDEA 285
           G+ F  Y    + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416



 Score = 37.9 bits (84), Expect(2) = 3e-05
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           ++FV GL     E  +RE   +FG +    +V D+ETG  +G+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402



 Score = 26.6 bits (56), Expect(2) = 3e-05
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213
           L+M P ++    +   H R++++GGL     + S+  F+ Q    V        D VV  
Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278

Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384
           +      K F F+   +   V+EA N     +DG I E  P++ V R     P  +AT+
Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 41/76 (53%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           + + P  SG   E P+   ++F+GGL Y  T+S ++E  E +G +    ++KD +T  SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400

Query: 238 GFGFITYSQAHMVDEA 285
           G+ F  Y    + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416



 Score = 37.9 bits (84), Expect(2) = 3e-05
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           ++FV GL     E  +RE   +FG +    +V D+ETG  +G+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402



 Score = 26.6 bits (56), Expect(2) = 3e-05
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213
           L+M P ++    +   H R++++GGL     + S+  F+ Q    V        D VV  
Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278

Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384
           +      K F F+   +   V+EA N     +DG I E  P++ V R     P  +AT+
Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 41/76 (53%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           + + P  SG   E P+   ++F+GGL Y  T+S ++E  E +G +    ++KD +T  SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400

Query: 238 GFGFITYSQAHMVDEA 285
           G+ F  Y    + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416



 Score = 37.9 bits (84), Expect(2) = 3e-05
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           ++FV GL     E  +RE   +FG +    +V D+ETG  +G+
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402



 Score = 26.6 bits (56), Expect(2) = 3e-05
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213
           L+M P ++    +   H R++++GGL     + S+  F+ Q    V        D VV  
Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278

Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384
           +      K F F+   +   V+EA N     +DG I E  P++ V R     P  +AT+
Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           +P   R +++G +  + T+  L+E +   G +    +++  K+     +GF+ Y      
Sbjct: 54  DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSA 109

Query: 277 DEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450
             A  +    ++GR +  +PI+        + E +++   +FV  L  ++ +  L + FS
Sbjct: 110 ALAILS----LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS 165

Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519
            F +     V+ D++TG+ RGFG
Sbjct: 166 VFSSCSDARVMWDQKTGRSRGFG 188



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           +F+G L    TD++L + +  +    D  VM D KT RS+GFGF+++        A N
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +1

Query: 94  EEPEHTRK---LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS- 261
           E PE+  +   +++G L    T   L  ++   G      V+++ + +R KGFGF+ Y+ 
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNT 311

Query: 262 --QAHMVDEAQNNRPHKIDGRI 321
             +A +  +  N +P+  + +I
Sbjct: 312 HPEAALAIQMGNTQPYLFNRQI 333


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY----SQAHMV 276
           T +LF+  L Y  T+  L E +  +G+I +V ++ D +TKRS+G  +I Y      A  +
Sbjct: 260 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319

Query: 277 DEAQNNRPHKIDGRIVEPIRAVPRE-EIKRPEASATVKKLFVAGLKQDIEEE 429
           +E  N+      GR++  + A  RE   K+   ++ + K F    KQ  EE+
Sbjct: 320 EELDNS---SFQGRLLHILPAKHRETSDKQVNDTSNLPKTF----KQKREEQ 364



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 22/42 (52%), Positives = 27/42 (64%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           +LFV  L     EE+L E+FSTFG I  V +V DKET + RG
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRG 303


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = +1

Query: 79  SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           SGD     +    LF+G L + TT+ +L+E   ++G I ++ +++   T  S+G+GF+ Y
Sbjct: 53  SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112

Query: 259 SQAHMVDEAQNNRPHK-IDGR 318
                +  A  +  H  IDGR
Sbjct: 113 ETEKEMLRAYEDAHHSLIDGR 133



 Score = 34.3 bits (75), Expect = 0.050
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           LFV  L     E+ LRE  S +G I ++ +V    TG  RG+G
Sbjct: 66  LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294
           L+IG L     D  L   +  +GEIV   V+KD  T  SKG+GF+ Y+   M + A Q  
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541

Query: 295 RPHKIDGR 318
             ++ +GR
Sbjct: 542 NGYRFEGR 549



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           K P        L++  L   +E++ L   FS+FG IV   V+ D+ TG  +G+G
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294
           L+IG L     D  L   +  +GEIV   V+KD  T  SKG+GF+ Y+   M + A Q  
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541

Query: 295 RPHKIDGR 318
             ++ +GR
Sbjct: 542 NGYRFEGR 549



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           K P        L++  L   +E++ L   FS+FG IV   V+ D+ TG  +G+G
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 285
           + LF+  L Y T   ++ +F+++ GE+V V ++ + K K   G GF+ ++  +  +EA  
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGK-LVGCGFVEFASVNEAEEALQ 185

Query: 286 -------QNNR-------------------PHKIDGRIVEPIRAVPREEIKRPEASATVK 387
                   NN+                    HK+  +    + + P EE +RP  S   +
Sbjct: 186 KKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVE-E 244

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            LFVA L    +  D+ ++F+  G +VS+ ++ + E GK  G+G
Sbjct: 245 VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYG 287



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
 Frame = +1

Query: 85  DDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           +D   P    + LF+  L  +T  S + +F+   GE+V + +M + + K   G+GF+ ++
Sbjct: 234 EDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH-VGYGFVEFA 292

Query: 262 QAHMVDEAQNNR------PHK--IDGRIVEPI------------RAVPREEIKRP----E 369
            A    +A  N+       HK  ID     P              ++P +E + P    E
Sbjct: 293 SADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVE 352

Query: 370 ASATVKK-LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           A    KK LFVA L +  E   +  +F   G +V V ++ +  TGK  G
Sbjct: 353 AVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVG 400


>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
           similar to cleavage stimulation factor 64 kilodalton
           subunit GB:AAD47839 GI:5713194 from [Drosophila
           melanogaster], SP|P33240 Cleavage stimulation factor, 64
           kDa subunit {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 461

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +1

Query: 370 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +S+  + +FV  +  D  EE LRE     G +VS  +VTD+ETGK +G+G
Sbjct: 4   SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYG 53



 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +F+G + Y  T+  L+E   + G +V   ++ D +T + KG+GF  Y        A+ 
Sbjct: 9   RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68

Query: 292 N-RPHKIDGR 318
           N + ++I+GR
Sbjct: 69  NLQSYEINGR 78


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
 Frame = +1

Query: 64  MKPSESGD--DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           M+P  SG+     +P   R ++ G +  + T+  L+E +   G I    +++  K+    
Sbjct: 45  MEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--- 101

Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLK 411
            +GF+ Y        A       ++GR +  +P++        + E +++   +FV  L 
Sbjct: 102 -YGFVHYFDRRCASMAIMT----LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156

Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
            ++ +  L + FS F +     V+ D++TG+ RGFG
Sbjct: 157 PEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFG 192



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           +F+G L    TD++L + +  +    D  VM D KT RS+GFGF+++        A N
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 79  SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S +D  E  P+ T  +++G L    T   L   +   G      V+++ + +R KGFGF+
Sbjct: 257 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311

Query: 253 TYS 261
            Y+
Sbjct: 312 RYN 314


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           + +++G L +   ++ L   +    E  IV V V+++     S+G+GF+ +    + D+ 
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160

Query: 286 QNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS-T 453
                        +P R   A      KR E +     +FV  L  D+ +  L E FS  
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220

Query: 454 FGNIVSVSVVTDKETGKKRGFG 519
           + ++ +  VV D  TG+ +G+G
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYG 242



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           +F+G L    +D+ L E F E++  +    V+ D  T RSKG+GF+ +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           KL++ GL    +E  L++ FS+F  +    V+T+K TG+ RG+G
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYG 75



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           KL+IGGL   T + SLK+ +  +  + +  VM +  T RS+G+GF+ +
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           +++GGL Y  T+ +++  +  +G ++ V ++ D ++ R K +GF+T+S     D+A  + 
Sbjct: 9   VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67

Query: 298 PHK-IDGRIV 324
             K I GR V
Sbjct: 68  DGKSIGGRAV 77


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 82  GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           G + E P  T  L++ GL  R TD  L+  + + G++    ++ +P+T+ S+GF F+T S
Sbjct: 63  GSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P H  ++++GG+    T+  LK F    GE+ +V +M++  +   KG+ F+T+    +  
Sbjct: 88  PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147

Query: 280 EA 285
           EA
Sbjct: 148 EA 149


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           K+++G L    T   L+  + + G++V   V + P T +S GFGF+T+S    V+ A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++F+GGL Y  T+  ++E  E +G +    ++KD +T  SKG+ F  Y    + D A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432



 Score = 36.7 bits (81), Expect(2) = 1e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           ++FV GL     E  +RE   +FG +   ++V D+ETG  +G+
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGY 418



 Score = 25.8 bits (54), Expect(2) = 1e-04
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
 Frame = +1

Query: 106 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMKDPKTKRSKGFGFITYS 261
           H R++++GGL     + S+  F+ Q    +        D VV  +      K F F+   
Sbjct: 253 HARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVV--NVYINHEKKFAFV--- 307

Query: 262 QAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384
           +   V+EA N     +DG I+E  P++ V R     P  +AT+
Sbjct: 308 EMRSVEEASN--AMALDGIILEGVPVK-VRRPTDYNPSLAATL 347


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +1

Query: 319 IVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 498
           ++E I  +P  E+K P+       LFV  L    E+EDL   FS FG +VS  V+ D +T
Sbjct: 226 VLESIGDIPEAEVKPPD-----NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKT 280

Query: 499 G 501
           G
Sbjct: 281 G 281


>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
           protein low similarity to heterogeneous nuclear
           ribonucleoprotein G [Mus musculus] GI:5579009; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 152

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEA 285
           K+ +  L + T++  LK  +  +GEI +V ++KD   KRSKG+ FI ++    A +  E 
Sbjct: 41  KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100

Query: 286 QNNRPHKIDGRIV 324
            + R +  +GR++
Sbjct: 101 MDRRMY--NGRMI 111


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S    + E P  T  L++ GL  R TD  L+  + + G++    ++ +P+T+ S+GF F+
Sbjct: 61  SRGRSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118

Query: 253 TYS 261
           T S
Sbjct: 119 TMS 121


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S + +  EE     +L    + + +T   ++  +E++G ++D+  M   K +R++G  FI
Sbjct: 81  SSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIE-MSMHKKERNRGLVFI 139

Query: 253 TYSQAHMVDEAQNNRPH-KIDGRI--VEPIRAVPREEIKRPEASATVK--KLFVAGLKQD 417
             +       A  +    + +GR   V+  +   ++     E  + V    LFVA L  +
Sbjct: 140 EMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFE 199

Query: 418 IEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFG 519
              + L+E+F    GN+VS  V+  +   +  G+G
Sbjct: 200 ARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 234



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           P  T  LF+  L +      LKEF++   G +V   V+     +RS G+GF+++      
Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 244

Query: 277 DEA 285
           + A
Sbjct: 245 EAA 247


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L++  LD+  T+S +   +  +G++  V V+KD  T++S+G  F+ Y       +A  + 
Sbjct: 59  LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118

Query: 298 PHKI-DGR 318
             KI +GR
Sbjct: 119 DAKILNGR 126



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           L+V+ L   +   D+   FSTFG +  V+V+ D+ T + RG
Sbjct: 59  LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRG 99


>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++IG +D R +D  L +   Q G ++D+ + +D +T + KGF F  Y    + D A
Sbjct: 9   VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           +++  + + + +  L +     G ++ + +  DKET K +GF
Sbjct: 9   VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGF 50


>At5g65260.1 68418.m08209 polyadenylate-binding protein family
           protein / PABP family protein low similarity to
           poly(A)-binding protein II [Drosophila melanogaster]
           GI:6007612; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain
          Length = 220

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 38/75 (50%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           +E    R +F+G +DY  T   +++ ++  G +  V ++ D K  + KGF ++ + +   
Sbjct: 86  KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEA 144

Query: 274 VDEAQNNRPHKIDGR 318
           V EA      ++ GR
Sbjct: 145 VQEALQLNESELHGR 159


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 31/87 (35%), Positives = 45/87 (51%)
 Frame = +1

Query: 130 GLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 309
           GL   TTD SL++ +  +  ++     KD +T+R KGFGFIT+      D+AQ      +
Sbjct: 77  GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESE---DDAQ-KALKAL 127

Query: 310 DGRIVEPIRAVPREEIKRPEASATVKK 390
           +G+IV   R +  E  K  EA  T  K
Sbjct: 128 NGKIVNG-RLIFVETAKEVEAPTTSLK 153


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           +P   R +++G +  + T+  L+E +   G +    +++    K    +GF+ Y      
Sbjct: 49  DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSA 104

Query: 277 DEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450
             A  +    ++GR +  +PI+        + E +++   +FV  L  ++ +  L   FS
Sbjct: 105 GLAILS----LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFS 160

Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519
            +       V+ D++TG+ RGFG
Sbjct: 161 VYPTCSDARVMWDQKTGRSRGFG 183



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +1

Query: 79  SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           SG   +   H   +F+G L    TD+ L   +  +    D  VM D KT RS+GFGF+++
Sbjct: 129 SGQREDTSSHFN-IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187



 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 67  KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 246
           K + +G+  E       +++G L    +   L   +   G      V+++ + +R KGFG
Sbjct: 245 KDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFG 300

Query: 247 FITYS 261
           F+ YS
Sbjct: 301 FVRYS 305


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 285
           R +F+G  +Y T  S L+  ++++G  VD V MK        G+ F+ +      ++A  
Sbjct: 2   RPVFVGNFEYETRQSDLERLFDKYGR-VDRVDMK-------SGYAFVYFEDERDAEDAIR 53

Query: 286 -QNNRPHKIDGRIV-----EPIRAVPREEIKRPEASATVKKLFVAGLKQ-DIEEEDLREY 444
             +N P   + R +     +  R  PR + K P      K LFV        +E D+ ++
Sbjct: 54  KLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKH 113

Query: 445 FSTFGNIVSVSV 480
           F  +G + +V +
Sbjct: 114 FEPYGKVTNVRI 125


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +1

Query: 397 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           V  L +D  E DL E F  FG +  V V  D++TG  RGFG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFG 257



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
 Frame = +1

Query: 73  SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S  G D         + +  L   T +  L E +  +G +  V V  D KT  S+GFGF+
Sbjct: 200 SAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259

Query: 253 TYSQAHMVDEAQNN-RPHKIDGRIVEPIRAVPR 348
            +        A N    +  D  I+    A PR
Sbjct: 260 NFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292


>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
           nearly identical to SC35-like splicing factor SCL28, 28
           kD [Arabidopsis thaliana] GI:9843655; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 236

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 133 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-I 309
           LD R  D  L++ +E++G + D+ + ++  T   +GFGF+ Y  A    EA     HK I
Sbjct: 56  LDARPND--LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 113

Query: 310 DGRIVEPIRAVPREEIKRPEASAT 381
            GR +  + A   E  K P+   T
Sbjct: 114 GGREIAIVFA--EENRKTPQEMRT 135



 Score = 33.5 bits (73), Expect = 0.088
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           R   S+    L +  L  D    DLR+ F  FG +  + +  +  TG+ RGFG
Sbjct: 39  RDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           R +     A  ++ KL+VA + +   E D+R+ F  +GN+  + +  DK TG++  +
Sbjct: 97  RSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAY 153


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L++GGL     +S L   +  +G+I DV    D   ++ + FGF+T+ +      A +N 
Sbjct: 15  LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74

Query: 298 P-HKIDGRIVEPIRAVPREEIKRPE 369
              ++ GR++    A+P E+IK  E
Sbjct: 75  DGAELYGRVLTVNYALP-EKIKGGE 98



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L+V GL  ++ E  L   F  FG+I  V    D+   K R FG
Sbjct: 15  LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFG 57


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
           H    ++  P+R +     + +  EAS+   ++  LFV G    + E  L++ FS FG +
Sbjct: 25  HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 84

Query: 466 VSVSVVTDKETGKKRGFG 519
            +V ++ ++ T +  G+G
Sbjct: 85  TNVKIIANERTRQSLGYG 102


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
           H    ++  P+R +     + +  EAS+   ++  LFV G    + E  L++ FS FG +
Sbjct: 44  HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 103

Query: 466 VSVSVVTDKETGKKRGFG 519
            +V ++ ++ T +  G+G
Sbjct: 104 TNVKIIANERTRQSLGYG 121


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
 Frame = +1

Query: 64  MKPSESGD--DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           M+P  SG+     +P   R ++ G +  + T+  L+E +   G I    +++  K+    
Sbjct: 45  MEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--- 101

Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLK 411
            +GF+ Y        A       ++GR +  +P++        + E +++   +FV  L 
Sbjct: 102 -YGFVHYFDRRCASMAIMT----LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156

Query: 412 QDIEEEDLREYFSTFGNIVS----VSVVTDKETGKKRGFG 519
            ++ +  L + FS F +  S      V+ D++TG+ RGFG
Sbjct: 157 PEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFG 196



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIV----DVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           +F+G L    TD++L + +  +        D  VM D KT RS+GFGF+++        A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209

Query: 286 QN 291
            N
Sbjct: 210 IN 211



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 79  SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252
           S +D  E  P+ T  +++G L    T   L   +   G      V+++ + +R KGFGF+
Sbjct: 261 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315

Query: 253 TYS 261
            Y+
Sbjct: 316 RYN 318


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +1

Query: 76  ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK-DPKTKRSKGFGFI 252
           E+ +  +E     K+F+G L         +EF+ Q+G I +V+++K   + +++ GFGFI
Sbjct: 153 ETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFI 212

Query: 253 TYSQAHMVDEAQNNRPHKIDGRIV 324
            Y+      +A      +  GRI+
Sbjct: 213 IYAAEKSAMKAVEFDGVEFHGRIL 236



 Score = 34.3 bits (75), Expect = 0.050
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 343 PREEIKRPEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT-DKETGKKRGF 516
           P EE + P+     + K+FV  L   I++ +  E+F  FG I +V ++    E  K  GF
Sbjct: 150 PEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGF 209

Query: 517 G 519
           G
Sbjct: 210 G 210


>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 817

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/78 (28%), Positives = 42/78 (53%)
 Frame = +1

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459
           +A+N +    D    E  + + + ++ R E +A     F++ L    +EED+R++F   G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675

Query: 460 NIVSVSVVTDKETGKKRG 513
            + S+ ++  K+TGK RG
Sbjct: 676 GVDSIRILHHKDTGKPRG 693


>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 816

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/78 (28%), Positives = 42/78 (53%)
 Frame = +1

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459
           +A+N +    D    E  + + + ++ R E +A     F++ L    +EED+R++F   G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675

Query: 460 NIVSVSVVTDKETGKKRG 513
            + S+ ++  K+TGK RG
Sbjct: 676 GVDSIRILHHKDTGKPRG 693


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 288
           L+IG + +   ++ ++ F+ Q+G +  V V ++ KT +SK FGFI +     A +   A 
Sbjct: 62  LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121

Query: 289 NN---RPHKIDGRIVEPIRAVP 345
           N+     H +   ++EP    P
Sbjct: 122 NDYLLMEHMLKVHVIEPENVKP 143



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 328 PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 507
           P R  P   +  P        L++  +     E ++  +FS FG +  V V  +K+TGK 
Sbjct: 44  PARKAP---VTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKS 100

Query: 508 RGFG 519
           + FG
Sbjct: 101 KHFG 104


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           L V  L+ D  +EDLR+ F  FG +  + +  D  TG  RGFG
Sbjct: 38  LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFG 80



 Score = 33.5 bits (73), Expect = 0.088
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L +  L +      L++ +EQ+G + D+ + +D  T   +GFGF+ +       +A+   
Sbjct: 38  LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94

Query: 298 PHKIDGRIV 324
            H +DG ++
Sbjct: 95  -HHMDGYLL 102


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = +1

Query: 343 PREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           PR        S     L V  L+ D  +EDLR  F  FG +  + +  D  TG  RGFG
Sbjct: 23  PRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFG 81



 Score = 34.7 bits (76), Expect = 0.038
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L +  L +      L+  +EQ+G + D+ + +D  T   +GFGFI +       EA+   
Sbjct: 39  LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95

Query: 298 PHKIDGRIV 324
            H++DG ++
Sbjct: 96  -HQMDGYLL 103


>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
           sativus] GI:7528270; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 497

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 24/77 (31%), Positives = 42/77 (54%)
 Frame = +1

Query: 55  ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234
           IL MK  ES    EE   T+ LF+  L      S +  F++  GE+V V ++ + + K +
Sbjct: 228 ILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHA 287

Query: 235 KGFGFITYSQAHMVDEA 285
            G+GF+ ++ A+  ++A
Sbjct: 288 -GWGFVEFASANEAEKA 303


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           +E    R +++G +DY  T   ++  ++  G +  V ++ D K  + KGF ++ + +   
Sbjct: 83  KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141

Query: 274 VDEAQNNRPHKIDGR 318
           V EA      ++ GR
Sbjct: 142 VQEALQLNESELHGR 156


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/75 (24%), Positives = 37/75 (49%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           +E    R +++G +DY  T   ++  ++  G +  V ++ D K  + KGF ++ + +   
Sbjct: 83  KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141

Query: 274 VDEAQNNRPHKIDGR 318
           V EA      ++ GR
Sbjct: 142 VQEALQLNESELHGR 156


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L +  L     ++ LKE +  +GE++ V +  D      +G G++ +      ++AQ   
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 298 P-HKIDGRIVEPIRAV-PREEIKRP 366
              +IDG++V+    + PR+++  P
Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           L +  L     ++ LKE +  +GE++ V +  D      +G G++ +      ++AQ   
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 298 P-HKIDGRIVEPIRAV-PREEIKRP 366
              +IDG++V+    + PR+++  P
Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184


>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 674

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276
           E   +R +F+  + +  T  SL   + ++GE++   ++ DP T +  G  +I +++    
Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570

Query: 277 DEA 285
           + A
Sbjct: 571 ENA 573



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           RP   A+ + +FVA +     ++ L  +F+ FG ++   +VTD  TG+  G
Sbjct: 508 RPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSG 558


>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
           PABP, putative contains similarity to poly(A)-binding
           protein II [Mus musculus] GI:2351846; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 227

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 16/78 (20%), Positives = 40/78 (51%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           +E   +R +++G +DY  T   +++ ++  G +  V ++ D K  + KGF ++ + +   
Sbjct: 97  KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEA 155

Query: 274 VDEAQNNRPHKIDGRIVE 327
           V  +      ++ GR ++
Sbjct: 156 VQNSLILNESELHGRQIK 173


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 160 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPIR 336
           L+E +E++G + DV + +D  + + +GF F+ +  A+   EAQ +   +   GR +  + 
Sbjct: 63  LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV- 121

Query: 337 AVPREEIKRPE 369
            V  E  KRPE
Sbjct: 122 -VASESRKRPE 131



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           L V  +  D   E+LRE F  FG +  V +  D  +G+ RGF
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGF 90


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 20/85 (23%), Positives = 42/85 (49%)
 Frame = +1

Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
           P     L+I  LD + ++  L   +  +G+++  V+ KD + + S+GF FI +  A    
Sbjct: 13  PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGE-SRGFAFIEFESADSAG 71

Query: 280 EAQNNRPHKIDGRIVEPIRAVPREE 354
            A  +   ++ G+ +  ++  P+ E
Sbjct: 72  RAMLHMDGRLIGQKILCVQRTPKVE 96


>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
           protein low similarity to poly(A) binding protein II
           from [Xenopus laevis] GI:11527140, [Mus musculus]
           GI:2351846, [Bos taurus] GI:1051125; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) domain
          Length = 537

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = +1

Query: 67  KPS-ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRS 234
           KPS +SG+    E+   +R + +  + Y     ++  F+  + G + +V+V+ DP T+  
Sbjct: 426 KPSPQSGESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHP 485

Query: 235 KGFGFITYSQAHMVDEA 285
           KG  F+T++    V +A
Sbjct: 486 KGTAFVTFATKESVGKA 502


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           LF+  + ++ E+++L   F  FG ++S  V  DK TG  + FG
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           LFI  +     D  L   ++ +G+++   V  D  T  SK FGFI+Y        A N
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           LF+  + ++ E+++L   F  FG ++S  V  DK TG  + FG
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 374



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           LFI  +     D  L   ++ +G+++   V  D  T  SK FGFI+Y        A N
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389


>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
           similar to SP|P52298 20 kDa nuclear cap binding protein
           (CBP20) (NCBP interacting protein 1) {Homo sapiens};
           non-consensus AT donor splice site at exon 4, AC
           acceptor splice site at exon 5; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 257

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285
           ++IG + + TT+  L E + + GEI  +++  D  TK   GF F+ +      ++A
Sbjct: 36  VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           E PE+  +LF G L     D  L + + ++       V++D +T ++KG+GF+++
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185



 Score = 34.3 bits (75), Expect = 0.050
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519
           +LF   L  ++ ++ L + F+ F       V+ DK TGK +G+G
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYG 181


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 19/80 (23%), Positives = 42/80 (52%)
 Frame = +1

Query: 277 DEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTF 456
           +E  ++R  ++  R  E + +  R     P+ S     + V+G+ ++ +EED+   F  F
Sbjct: 62  EEKDSDRQRRLSSRDFESLGSDGRPG---PQRSVEGWIILVSGVHEETQEEDITNAFGDF 118

Query: 457 GNIVSVSVVTDKETGKKRGF 516
           G I ++++  D+ +G  +G+
Sbjct: 119 GEIKNLNLNLDRRSGYVKGY 138


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           +R LF+  +D    D  L   ++Q+G++  +         +++GF  ++Y       +A 
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRAL-----HTAGKNRGFIMVSYYDIRAAQKAA 264

Query: 289 NN-RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
                  + GR ++   ++P+E    P+ +++   L+V  L   I  E+L   FS++G I
Sbjct: 265 RALHGRLLRGRKLDIRYSIPKE---NPKENSSEGALWVNNLDSSISNEELHGIFSSYGEI 321

Query: 466 VSV 474
             V
Sbjct: 322 REV 324


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
 Frame = +1

Query: 103 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 270
           EH +R LF+  ++    DS L   +EQ+G+I  +       T + +GF  I+Y     A 
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218

Query: 271 MVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450
           M   +  N+P  +  R ++   ++P++     E       L V  L   I  +DL   F 
Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274

Query: 451 TFGNIVSVSVVTDKETGK 504
             G I  +     K   K
Sbjct: 275 AHGEIKEIRETPHKRHHK 292


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
 Frame = +1

Query: 103 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 270
           EH +R LF+  ++    DS L   +EQ+G+I  +       T + +GF  I+Y     A 
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218

Query: 271 MVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450
           M   +  N+P  +  R ++   ++P++     E       L V  L   I  +DL   F 
Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274

Query: 451 TFGNIVSVSVVTDKETGK 504
             G I  +     K   K
Sbjct: 275 AHGEIKEIRETPHKRHHK 292


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +1

Query: 67  KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 246
           K ++  DD+E     R LFI  L +  T   +K+ +  +GE+  + ++    TKR +G  
Sbjct: 551 KETQDNDDFE-----RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTA 605

Query: 247 FITYSQA 267
           F+ +  A
Sbjct: 606 FVKFKTA 612



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           + LF+  L  D+ +E++++ F+ FG + S+S+V  K T +  G
Sbjct: 561 RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEG 603


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           KL+I  LDY   +  +KE + + GE+    V  D ++ RSKG   + YS+
Sbjct: 87  KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 135



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           T  KL+++ L   +  ED++E F+  G +   +V  D+ +G+ +G
Sbjct: 84  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 127


>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
           putative
          Length = 178

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           KL+I  LDY   +  +KE + + GE+    V  D ++ RSKG   + YS+
Sbjct: 23  KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 71



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           T  KL+++ L   +  ED++E F+  G +   +V  D+ +G+ +G
Sbjct: 20  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 63


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           KL+I  LDY   +  +KE + + GE+    V  D ++ RSKG   + YS+
Sbjct: 89  KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 137



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           T  KL+++ L   +  ED++E F+  G +   +V  D+ +G+ +G
Sbjct: 86  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 129


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +1

Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           KR   +     L V GL +D +EE LR  FS    I  + +V DK T   RGF
Sbjct: 449 KRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGF 501



 Score = 33.5 bits (73), Expect = 0.088
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 124 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258
           + GL  ++T+  L +   +WG +  V V+++  +  S+GF FI +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           + +  S +G    E   T  L + GLD    +  L+  + +   I D+ +++D  T  S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499

Query: 238 GFGFITY---SQAHMVDEAQNNRPHKIDGRIV 324
           GF F+ +     A    EA N    + +G+I+
Sbjct: 500 GFAFVHFYSVEDATKALEATNRTALERNGKIL 531



 Score = 30.3 bits (65), Expect = 0.82
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +1

Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           SATV    V GL     EEDL +  + +G +  V V+ ++ +G  RGF
Sbjct: 297 SATV---VVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGF 341


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 22/67 (32%), Positives = 35/67 (52%)
 Frame = +1

Query: 58  LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237
           L+MKP  + D   +   +  L++G L   TT+S L E + ++G+I  + V        S+
Sbjct: 3   LSMKPFRADDSGFQ---SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYS------SR 53

Query: 238 GFGFITY 258
           GF FI Y
Sbjct: 54  GFAFIYY 60



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 498
           K L+V G+  ++ ++DL E FS FG I     + +++T
Sbjct: 250 KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT 287


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +1

Query: 82  GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           G D         + +  L   T    L E +  +G +    V  D KT  S+GFGF+++ 
Sbjct: 164 GSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFV 223

Query: 262 QAHMVDEAQN 291
                  A N
Sbjct: 224 SREDAQRAIN 233


>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
           putative BcDNA.LD24793, Drosophila melanogaster,
           EMBL:AF172637
          Length = 292

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264
           KL+I  LDY  ++  +KE + + G++    +  D ++ RSKG   + +S+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSR 157



 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513
           T  KL+++ L   +  ED++E FS  G++    +  D+ +G+ +G
Sbjct: 106 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKG 149


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +1

Query: 55  ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234
           ++N  P++S   +        LF+G L + TTD+ ++    Q+G + ++    +  + +S
Sbjct: 186 MMNKSPTQS---FVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS 242

Query: 235 KGF 243
           KG+
Sbjct: 243 KGY 245


>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
           protein similar to SP|P42731 Polyadenylate-binding
           protein 2 (Poly(A) binding protein 2) (PABP 2)
           {Arabidopsis thaliana}; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 423

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 340 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKE 495
           +PR+E + P A    + LFVA L    +  D+  +    G +VSV ++ + E
Sbjct: 112 LPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHE 163


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
 Frame = +1

Query: 88  DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 258
           ++   EH +R LF+  ++    DS L   +E +GEI  +         +S+GF  I+Y  
Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 230

Query: 259 -SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435
              AH    A  N    +  R ++   ++P+E     E       L +  +   +  ++L
Sbjct: 231 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 286

Query: 436 REYFSTFGNI 465
            + F  +G I
Sbjct: 287 LQLFGAYGEI 296



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
           R  ++ P      + LFV  +   +E+ +L   F  FG I S+
Sbjct: 172 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 214


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
 Frame = +1

Query: 88  DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 258
           ++   EH +R LF+  ++    DS L   +E +GEI  +         +S+GF  I+Y  
Sbjct: 189 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 243

Query: 259 -SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435
              AH    A  N    +  R ++   ++P+E     E       L +  +   +  ++L
Sbjct: 244 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 299

Query: 436 REYFSTFGNI 465
            + F  +G I
Sbjct: 300 LQLFGAYGEI 309



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474
           R  ++ P      + LFV  +   +E+ +L   F  FG I S+
Sbjct: 185 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 227


>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative similar to
           spliceosomal protein [Solanum tuberosum] GI:169589
          Length = 232

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKE----FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----A 267
           + ++I  L+ R     LK      + Q+G I+DVV +K PK    +G  ++T+S+     
Sbjct: 10  QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAG 66

Query: 268 HMVDEAQN 291
           H V + QN
Sbjct: 67  HAVRQMQN 74


>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
           RNA-binding protein GB:CAB40027 GI:4539439 from
           [Arabidopsis thaliana]
          Length = 358

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +++  LD + T+  L   +   G++VD  +  DP +     F FI ++       A N
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR--FAFIEFTDEEGAMTALN 230

Query: 292 NR-------PHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438
                    P K+      + P+    +PR E +R   + T+   +   + + + + D++
Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTI---YCTNIDKKVTQSDVK 287

Query: 439 EYFSTF-GNIVSVSVVTDKETGKKRGF 516
            +F +F G +  + ++ D +   +  F
Sbjct: 288 IFFESFCGEVYRLRLLGDYQHSTRIAF 314


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +1

Query: 76  ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255
           ES DD    E  + L++GGL+ R  +  +++ +   GEI  + ++ D      K   F+T
Sbjct: 220 ESPDD----ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVT 269

Query: 256 YSQAHMVDEAQNNRPHKI 309
           Y+     ++A     +++
Sbjct: 270 YTSREGAEKAAQELSNRL 287


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           +R L +G +     D  LK  +EQ+G+I  +         +++GF  ++Y        A 
Sbjct: 216 SRTLLVGNISSNVEDYELKVLFEQFGDIQAL-----HTACKNRGFIMVSYCDIRAAQNAA 270

Query: 289 NNRPHK-IDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
               +K + G  ++   ++ +E   + + S     L V  L   I  ++L     ++G +
Sbjct: 271 RALQNKLLRGTKLDIRYSISKENPSQKDTSKGA--LLVNNLDSSISNQELNRLVKSYGEV 328

Query: 466 VSV 474
             +
Sbjct: 329 KEI 331


>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 130

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +1

Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465
           H    ++  P+R +     + +  EAS+   ++  LFV G    + E  L++ FS FG +
Sbjct: 25  HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 84

Query: 466 VSVSVVTDKETGKKR 510
            +    +  +  +KR
Sbjct: 85  TNEHYFSGSKNHRKR 99


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase [Lycopersicon
           esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 22/123 (17%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
 Frame = +1

Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294
           K+++ G +  T +  +K F E   + + V  +++  +K       +   + + V  ++ N
Sbjct: 390 KIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTN 449

Query: 295 RPHKIDGRIVEPIRAVPR--EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468
             +++   + E I   P+  E +    +      +++    + ++ ED+RE+   F  I 
Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509

Query: 469 SVS 477
           S+S
Sbjct: 510 SIS 512


>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
           protein low similarity to prediabetic NOD sera-reactive
           autoantigen [Mus musculus] GI:6670773,
           anaphase-promoting complex subunit 7 [Homo sapiens]
           GI:6180015; contains Pfam profile PF00515: TPR Domain
          Length = 558

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 178 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 65
           A  ++L+ +  F+ R HR  ++   Q LH + R PK S
Sbjct: 43  AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 67  KPSESGD-DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
           K  E G  +  E +  R L++GGL+ R  +  +++ +   GEI  + ++ +      K  
Sbjct: 212 KAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KAC 265

Query: 244 GFITYSQAHMVDEAQNNRPHKI 309
            F+TY+     ++A     +++
Sbjct: 266 AFVTYTTREGAEKAAEELSNRL 287


>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
           protein 
          Length = 90

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSV 480
           +V  L+ D EE DL+  FS FG+++  +V
Sbjct: 11  YVGNLESDTEENDLKNAFSQFGDVIHSNV 39


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           E+P+ T  ++IG +     D  +    E  G +   +  +DP TK+ KGFGF  +  A
Sbjct: 200 EKPQTT--IYIGKIATVENDFMMS-ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254


>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 328 PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 507
           PIR     E  +P+A  +   +FVA L  D   E L E F +FG I    +       KK
Sbjct: 258 PIRKQASAESIKPQAQGS--SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKK 315

Query: 508 RGFG 519
              G
Sbjct: 316 NCIG 319


>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative similar to Heterogeneous
           nuclear ribonucleoprotein SP|P55795, SP|P31943,
           SP|P52597 {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM) domain
          Length = 289

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = +1

Query: 94  EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273
           E+ E+T  L + GL Y      + EF+  +  I   V +      ++ G  F+ +     
Sbjct: 194 EKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEE 253

Query: 274 VDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEA 372
              A       I  R VE +    REE +R EA
Sbjct: 254 ARRAMAKDKMSIGSRYVE-LFPTTREEARRAEA 285


>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
           RNA-binding protein GB:AAA86641 GI:1174153 from
           [Arabidopsis thaliana]
          Length = 314

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
 Frame = +1

Query: 70  PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249
           P  +     E    R +++  +D   T+  L   +   G++VD  +  DP +     F F
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR--FAF 171

Query: 250 ITYSQAHMVDEAQN-------NRPHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLF 396
           + +S       A +         P ++      + P+    +PR E +R   S T+   +
Sbjct: 172 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTI---Y 228

Query: 397 VAGLKQDIEEEDLREYF-STFGNIVSVSVVTDK 492
              + ++  E+D+  +F S  G +  + ++ D+
Sbjct: 229 CTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQ 261


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243
           LF+G L + TTD+ L+    ++G + +V    +  + +SKG+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGY 277


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 271 MVDEAQNNRPHKIDGRIVEP-IRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447
           + DE   N   + +G  V P + A+P+E+    +       ++ A  ++     DLR  F
Sbjct: 266 ITDETAKNS--RTEGHFVTPKVMAIPKEKSVVQKPGIAQGFVWDAWTERVEAARDLR--F 321

Query: 448 STFGNIVSVSVVTDKETGKK 507
           S  GN+V   VV+  ETG K
Sbjct: 322 SFDGNVVEEDVVSPAETGGK 341


>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 204

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 61  NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI 192
           N  P+ +GD Y      + LF+  L+Y +++S +K  +E +G I
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPI 164


>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 334 RAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV-----VTDKET 498
           R  P  EI+ P+    +  + V  L +D   E++RE F   G+I SVS+     V + E 
Sbjct: 180 RLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEK 235

Query: 499 GKKR 510
           G K+
Sbjct: 236 GGKK 239


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 334 RAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV-----VTDKET 498
           R  P  EI+ P+    +  + V  L +D   E++RE F   G+I SVS+     V + E 
Sbjct: 180 RLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEK 235

Query: 499 GKKR 510
           G K+
Sbjct: 236 GGKK 239


>At5g13655.1 68418.m01588 hypothetical protein
          Length = 395

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 160 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 312
           L ++ ++W +I+ ++  KD  T +S   G++  +  H +   +++R H  D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351


>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
           profile: PF01722 BolA-like protein
          Length = 93

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 227 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQYEQFQGKRLKDQ 367
           ++Q +  L   LKPI L  + I G    + E+    EQF+GKRL ++
Sbjct: 4   KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50


>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) (2 copies)
          Length = 327

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 25/141 (17%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +++  +D   T+  L   +   G++VD  +  DP +     F F+ ++      EA +
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFADDQGAHEALS 198

Query: 292 NRPHKIDGRIV--EPIRAVPREEIKRP-----------EASATVKKLFVAGLKQDIEEED 432
                + G ++   P+R +P +    P           E     + ++   + + + + D
Sbjct: 199 -----LGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQAD 253

Query: 433 LREYF-STFGNIVSVSVVTDK 492
           +R +F S  G +  + ++ D+
Sbjct: 254 VRNFFESACGEVTRLRLLGDQ 274


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
            protein / RNA recognition motif (RRM)-containing protein
            contains Pfam profiles PF00076: RNA recognition motif.
            (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
            transport factor 2 (NTF2) domain
          Length = 1294

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 100  PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279
            P +   + +  L    T + ++  ++Q+GEI    V  + + KRS  +GF+ + + +   
Sbjct: 1072 PANNAAICVKNLPLNATIALVENAFKQFGEIRRGGV--EVRNKRSFSYGFVEFKEENAAQ 1129

Query: 280  EAQNNRPHKIDGRIV 324
             A    P  ID R V
Sbjct: 1130 RAIKASPVTIDLRSV 1144


>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 363

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 97  EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 216
           E E  + L++GGL+ R  +  + + +  +GE+  + VM +
Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259


>At4g10610.1 68417.m01735 RNA-binding protein, putative
          Length = 336

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +++  +D + T+  L   +  +G++VD  +  DP +     F FI ++       A N
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR--FAFIEFTDEVGARTALN 207

Query: 292 NR-------PHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438
                    P K+      + P+    +PR E +R   + T+   +   + + + + D++
Sbjct: 208 LSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTI---YCTNIDKKLTQTDIK 264

Query: 439 EYF-STFGNIVSVSVVTDKETGKKRGF 516
            +F S  G +  + ++ D     + GF
Sbjct: 265 LFFESVCGEVYRLRLLGDYHHPTRIGF 291


>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
           GI:1279563 from [Medicago sativa]
          Length = 335

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           F A L  D  +  L +YFS+FG I  V V     TG   G+
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGY 281


>At1g41855.1 68414.m04833 hypothetical protein
          Length = 261

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 217 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRI 321
           P+ K  KGFG +    + + +E++N +PH +  GR+
Sbjct: 13  PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRV 48


>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
           protein low similarity to transcriptional repressor
           Not4-Np [Homo sapiens] GI:6856207; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif)
          Length = 944

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 480
           +++ GL  ++ +EDL   +EYF  +G ++ VS+
Sbjct: 70  VYIVGLPLNLADEDLLQHKEYFGQYGKVLKVSM 102


>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +1

Query: 130 GLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297
           GLD+   D    +SL E YE+W     V    + K KR   F    ++  H+ +  + ++
Sbjct: 20  GLDFHNKDVESENSLWELYERWRSHHTVARSLEEKAKR---FNVFKHNVKHIHETNKKDK 76

Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVK 387
            +K+    +     +  EE +R  A + +K
Sbjct: 77  SYKLK---LNKFGDMTSEEFRRTYAGSNIK 103


>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 301 HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447
           H +  +  +    + RE+  R   S  VKKL V G +  I E+++  +F
Sbjct: 342 HSVTDKCGDACDCISREDKGRSLISCPVKKLEVRGFRGTIREKEMIRHF 390


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288
           +R +++G L     +  +++ + ++G IVD+ +   P   R   + F+ +  +   ++A 
Sbjct: 6   SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAI 62

Query: 289 NNRP-HKIDG 315
             R  + +DG
Sbjct: 63  KGRDGYNLDG 72


>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
           protein similar to SP|P34909 General negative regulator
           of transcription subunit 4 {Saccharomyces cerevisiae};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 989

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +1

Query: 391 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 480
           +++ GL  ++ +EDL   +EYF  +G ++ VS+
Sbjct: 111 VYIVGLPLNLADEDLLQRKEYFGQYGKVLKVSM 143


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291
           R +++G L        +++ + ++G IVD+ +   P   R  G+ F+ +      D+A  
Sbjct: 7   RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIY 63

Query: 292 NRP-HKIDG 315
            R  +  DG
Sbjct: 64  GRDGYDFDG 72


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/63 (20%), Positives = 28/63 (44%)
 Frame = +1

Query: 88  DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267
           D E     + +  G   Y   D    ++ E+WGE+  ++ ++    K  K F +I   ++
Sbjct: 19  DLETCTRPKMVTTGLFSYNFKDIGFTQYGEEWGEMKKLIGLELFSPKTQKSFRYIREEES 78

Query: 268 HMV 276
            ++
Sbjct: 79  DLL 81


>At2g33440.1 68415.m04099 splicing factor family protein similar to
           Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
           factor large subunit) {Homo sapiens} SP|P26368, {Mus
           musculus} SP|P26369; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 247

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516
           K+F+ G  + I  E L E  S FG + +   V++ +  ++  F
Sbjct: 41  KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83


>At1g78810.2 68414.m09186 expressed protein
          Length = 480

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -3

Query: 465 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 376
           N+S+  +++S+VF  NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372


>At1g78810.1 68414.m09185 expressed protein
          Length = 481

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -3

Query: 465 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 376
           N+S+  +++S+VF  NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372


>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 899

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 278 MKLKIIGLTKLTEELSSQYEQFQG 349
           M+L   G+ KL + LS +Y+QF+G
Sbjct: 1   MELVSFGVEKLWDRLSQEYDQFKG 24


>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 399

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 424 EEDLREYFSTFGNIVSVSV 480
           EED+ +YFSTFG +  V +
Sbjct: 169 EEDVSDYFSTFGPVQDVRI 187


>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 301 HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEE-EDLREYFSTFGNIVSVS 477
           H +  +  +    V RE+  R   S  VKKL + G +  I E E ++ +  +F  +  V 
Sbjct: 306 HFVTNKCGDACDYVSREDKGRSLVSCPVKKLQIKGFRGTIRELEMIKHFLYSFRCLEKVE 365

Query: 478 VVTDKETGKKR 510
           +  + E G+ R
Sbjct: 366 IYAE-EKGRTR 375


>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
           protein RBP37, Arabidopsis thaliana, PIR:T04196
          Length = 353

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261
           R +++  +D + T+ +L   +   G++VD  V  DP +     F FI ++
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR--FAFIEFT 216


>At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 621

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304
           +D++  P+ LH    ++ G      L    QK  D K +  +H+L+P  L KL ++I  +
Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304

Query: 305 KLTEELSSQYEQF 343
           +L E L      F
Sbjct: 305 QLPEFLGGSCSCF 317


>At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 625

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304
           +D++  P+ LH    ++ G      L    QK  D K +  +H+L+P  L KL ++I  +
Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304

Query: 305 KLTEELSSQYEQF 343
           +L E L      F
Sbjct: 305 QLPEFLGGSCSCF 317


>At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and Phosphatidylinositol
           Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
           cerevisiae]
          Length = 625

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304
           +D++  P+ LH    ++ G      L    QK  D K +  +H+L+P  L KL ++I  +
Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304

Query: 305 KLTEELSSQYEQF 343
           +L E L      F
Sbjct: 305 QLPEFLGGSCSCF 317


>At1g48880.1 68414.m05476 hypothetical protein
          Length = 485

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 432 VFFFNVLLQSSYKQLFNGGTSFWSFNLFPWNCSYWLDNSSVNFVRPIILSFINHMGLRIC 253
           V   +V   S+++   +G    WS N    +CS+W      +    I+L F+    +R C
Sbjct: 390 VSILDVTSMSAFRS--DGHVGLWSDNPLVPDCSHWCLPGVPDIWNEILLFFLFRQPVRSC 447

Query: 252 NKS 244
           + S
Sbjct: 448 SSS 450


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 331 IRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGN 462
           +RA+      +PE  A +++L    L++   E++L+   S+ GN
Sbjct: 65  VRALKASRAAKPEIDAAIEQLNKLKLEKSTVEKELQSIISSSGN 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,358,403
Number of Sequences: 28952
Number of extensions: 200260
Number of successful extensions: 1137
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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