BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS309G05f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 108 2e-24 At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 108 2e-24 At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 108 3e-24 At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 108 3e-24 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 107 4e-24 At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 106 1e-23 At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 106 1e-23 At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 103 6e-23 At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 103 6e-23 At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 103 6e-23 At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 102 1e-22 At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 102 1e-22 At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 97 5e-21 At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 97 8e-21 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 91 3e-19 At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 90 7e-19 At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 88 4e-18 At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 81 4e-16 At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 81 4e-16 At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 81 6e-16 At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 80 1e-15 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 77 5e-15 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 74 7e-14 At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 71 5e-13 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 69 2e-12 At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 69 3e-12 At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 69 3e-12 At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 69 3e-12 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 68 3e-12 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 68 4e-12 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 66 2e-11 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 66 2e-11 At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 63 1e-10 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 63 1e-10 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10 At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 63 1e-10 At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 63 1e-10 At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 63 1e-10 At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 63 1e-10 At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 62 2e-10 At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 62 2e-10 At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 62 2e-10 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 62 2e-10 At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 62 2e-10 At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 62 2e-10 At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 62 3e-10 At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 61 4e-10 At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 61 5e-10 At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 61 5e-10 At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 61 5e-10 At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 60 9e-10 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 60 9e-10 At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 60 1e-09 At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 60 1e-09 At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 59 2e-09 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 58 3e-09 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 58 3e-09 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 58 3e-09 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 58 3e-09 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 58 3e-09 At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 58 3e-09 At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 58 4e-09 At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 58 4e-09 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 58 5e-09 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 58 5e-09 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 6e-09 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 57 6e-09 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 57 6e-09 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 57 6e-09 At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 57 8e-09 At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 57 8e-09 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 56 1e-08 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 56 1e-08 At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 56 2e-08 At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 3e-08 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 55 3e-08 At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 55 3e-08 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 55 3e-08 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 54 6e-08 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 54 6e-08 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 53 1e-07 At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 53 1e-07 At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 53 1e-07 At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 53 1e-07 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 53 1e-07 At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 53 1e-07 At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 53 1e-07 At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 52 2e-07 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 52 2e-07 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 52 2e-07 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 52 2e-07 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 51 4e-07 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 51 4e-07 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 51 4e-07 At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 51 5e-07 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 50 1e-06 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 50 1e-06 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 50 1e-06 At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 1e-06 At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 49 2e-06 At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 49 2e-06 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 49 2e-06 At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 49 2e-06 At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 49 2e-06 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06 At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 3e-06 At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 3e-06 At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 48 5e-06 At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 48 5e-06 At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 48 5e-06 At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 48 5e-06 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 47 7e-06 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 47 7e-06 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 47 7e-06 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 9e-06 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 46 1e-05 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 1e-05 At5g51300.2 68418.m06360 splicing factor-related contains simila... 46 2e-05 At5g51300.1 68418.m06359 splicing factor-related contains simila... 46 2e-05 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 46 2e-05 At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 46 2e-05 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 46 2e-05 At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 45 3e-05 At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 45 4e-05 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 45 4e-05 At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 45 4e-05 At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 45 4e-05 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 44 5e-05 At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 44 5e-05 At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 44 5e-05 At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 44 6e-05 At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 1e-04 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 43 1e-04 At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 1e-04 At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 2e-04 At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 3e-04 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 42 3e-04 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 3e-04 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 42 3e-04 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04 At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 41 6e-04 At2g47310.1 68415.m05906 flowering time control protein-related ... 41 6e-04 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 41 6e-04 At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 40 8e-04 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 40 8e-04 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 40 8e-04 At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 40 0.001 At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 40 0.001 At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 40 0.001 At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 40 0.001 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 40 0.001 At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 39 0.002 At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.002 At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 39 0.002 At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 39 0.002 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 39 0.002 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 39 0.002 At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 38 0.003 At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 38 0.004 At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.004 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.005 At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 38 0.005 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 38 0.005 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 38 0.005 At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 37 0.007 At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.007 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.012 At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 36 0.017 At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 36 0.017 At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 36 0.017 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.022 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 35 0.029 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 35 0.029 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 35 0.029 At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.029 At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.050 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 33 0.088 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.20 At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 32 0.20 At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 31 0.36 At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 31 0.36 At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 31 0.36 At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.36 At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 31 0.36 At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.36 At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 0.47 At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 31 0.47 At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ... 31 0.47 At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.47 At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 31 0.47 At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.47 At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.62 At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 30 0.82 At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 30 1.1 At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 30 1.1 At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 1.4 At4g38440.1 68417.m05432 expressed protein 29 1.4 At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.4 At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 29 1.9 At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 29 1.9 At5g13655.1 68418.m01588 hypothetical protein 29 1.9 At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 29 1.9 At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 1.9 At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 1.9 At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 2.5 At4g10610.1 68417.m01735 RNA-binding protein, putative 28 3.3 At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 3.3 At1g41855.1 68414.m04833 hypothetical protein 28 3.3 At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 4.4 At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 28 4.4 At3g58940.1 68416.m06568 F-box family protein contains F-box dom... 28 4.4 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 4.4 At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 28 4.4 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 4.4 At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 5.8 At2g33440.1 68415.m04099 splicing factor family protein similar ... 27 5.8 At1g78810.2 68414.m09186 expressed protein 27 5.8 At1g78810.1 68414.m09185 expressed protein 27 5.8 At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ... 27 5.8 At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 27 7.7 At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 27 7.7 At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 27 7.7 At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /... 27 7.7 At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /... 27 7.7 At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /... 27 7.7 At1g48880.1 68414.m05476 hypothetical protein 27 7.7 At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ... 27 7.7 >At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 358 Score = 108 bits (260), Expect = 2e-24 Identities = 50/135 (37%), Positives = 83/135 (61%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ + Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79 Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474 H I+G+ VE R +P+ KK+FV G+ + E++L+++F+ +GN+V Sbjct: 80 T-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138 Query: 475 SVVTDKETGKKRGFG 519 V+ D ET + RGFG Sbjct: 139 QVIRDHETNRSRGFG 153 Score = 67.7 bits (158), Expect = 4e-12 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Frame = +1 Query: 70 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249 P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154 Query: 250 ITYSQAHMVDE--AQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375 + + +VDE ++ N D + VE +A P++ + R S Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQ-VEIKKAEPKKSLNRSPPS 197 Score = 39.9 bits (89), Expect = 0.001 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 A+ K+F+ GL +D ++F +G I ++ D+ TG+ RGFG Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63 >At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 231 Score = 108 bits (260), Expect = 2e-24 Identities = 50/135 (37%), Positives = 83/135 (61%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ + Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79 Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474 H I+G+ VE R +P+ KK+FV G+ + E++L+++F+ +GN+V Sbjct: 80 T-HVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138 Query: 475 SVVTDKETGKKRGFG 519 V+ D ET + RGFG Sbjct: 139 QVIRDHETNRSRGFG 153 Score = 64.9 bits (151), Expect = 3e-11 Identities = 25/71 (35%), Positives = 46/71 (64%) Frame = +1 Query: 70 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249 P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154 Query: 250 ITYSQAHMVDE 282 + + +VDE Sbjct: 155 VIFDSEEVVDE 165 Score = 39.9 bits (89), Expect = 0.001 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +1 Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 A+ K+F+ GL +D ++F +G I ++ D+ TG+ RGFG Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFG 63 >At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 495 Score = 108 bits (259), Expect = 3e-24 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 12/147 (8%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65 Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 438 H IDGR+VE +AVPR++ + R +S+ +K+FV GL + E D + Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125 Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519 YF FG V V+ D T + RGFG Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFG 152 Score = 86.6 bits (205), Expect = 9e-18 Identities = 41/92 (44%), Positives = 57/92 (61%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+ Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375 + H+++G++VE RAVP+E P S Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195 >At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 494 Score = 108 bits (259), Expect = 3e-24 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 12/147 (8%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65 Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 438 H IDGR+VE +AVPR++ + R +S+ +K+FV GL + E D + Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125 Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519 YF FG V V+ D T + RGFG Sbjct: 126 TYFEQFGTTTDVVVMYDHNTQRPRGFG 152 Score = 86.6 bits (205), Expect = 9e-18 Identities = 41/92 (44%), Positives = 57/92 (61%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+ Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375 + H+++G++VE RAVP+E P S Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 107 bits (257), Expect = 4e-24 Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 10/161 (6%) Frame = +1 Query: 67 KPSES---GDDYEEP------EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDP 219 KPSE DD +P + K+F+GGL TT + + + ++GEI D V+MKD Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77 Query: 220 KTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396 KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE R +PR + + KK+F Sbjct: 78 KTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGSMSSNDFK--TKKIF 133 Query: 397 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 V G+ +++++ +E+F FG + ++ D TG+ RGFG Sbjct: 134 VGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFG 174 Score = 70.5 bits (165), Expect = 6e-13 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 2/98 (2%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE-- 282 T+K+F+GG+ D KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188 Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396 A+ NR ++ G VE + + E K+P + T K F Sbjct: 189 AKGNR-IELSGTQVE----IKKAEPKKPNSVTTPSKRF 221 >At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 106 bits (254), Expect = 1e-23 Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 10/145 (6%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66 Query: 295 RPHKIDGRIVEPIRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 444 + H IDG+IVE +AVPR++ ++ + KK+FV GL + E + ++Y Sbjct: 67 K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125 Query: 445 FSTFGNIVSVSVVTDKETGKKRGFG 519 F+ FG I V V+ D T + RGFG Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFG 150 Score = 80.6 bits (190), Expect = 6e-16 Identities = 34/84 (40%), Positives = 57/84 (67%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161 Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE AVP++ Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185 >At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 431 Score = 106 bits (254), Expect = 1e-23 Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 10/145 (6%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ + Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66 Query: 295 RPHKIDGRIVEPIRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 444 + H IDG+IVE +AVPR++ ++ + KK+FV GL + E + ++Y Sbjct: 67 K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125 Query: 445 FSTFGNIVSVSVVTDKETGKKRGFG 519 F+ FG I V V+ D T + RGFG Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFG 150 Score = 80.6 bits (190), Expect = 6e-16 Identities = 34/84 (40%), Positives = 57/84 (67%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161 Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE AVP++ Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185 >At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 103 bits (248), Expect = 6e-23 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65 Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432 H IDGR VE +AVPR++ +KR + KK+FV GL I EE+ Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + YF FG I V V+ D T + RGFG Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154 Score = 82.6 bits (195), Expect = 1e-16 Identities = 36/81 (44%), Positives = 54/81 (66%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168 Query: 289 NNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE RAVP+E Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189 >At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 460 Score = 103 bits (248), Expect = 6e-23 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65 Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432 H IDGR VE +AVPR++ +KR + KK+FV GL I EE+ Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + YF FG I V V+ D T + RGFG Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154 Score = 82.6 bits (195), Expect = 1e-16 Identities = 36/81 (44%), Positives = 54/81 (66%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168 Query: 289 NNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE RAVP+E Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189 >At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing protein similar to DAZ associated protein 1 [Homo sapiens] GI:8671754; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 448 Score = 103 bits (248), Expect = 6e-23 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 14/149 (9%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65 Query: 295 RPHKIDGRIVEPIRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 432 H IDGR VE +AVPR++ +KR + KK+FV GL I EE+ Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + YF FG I V V+ D T + RGFG Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFG 154 Score = 82.6 bits (195), Expect = 1e-16 Identities = 36/81 (44%), Positives = 54/81 (66%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168 Query: 289 NNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE RAVP+E Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189 >At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 455 Score = 102 bits (245), Expect = 1e-22 Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 17/169 (10%) Frame = +1 Query: 64 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243 M P E E KLFIGG+ + T + L+E++ ++G++V+ V+M+D T R++GF Sbjct: 1 MNPEEQ--KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58 Query: 244 GFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREE---IKR---------PE-----A 372 GFI ++ + + ++ H IDGR VE +AVPR++ +KR P Sbjct: 59 GFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG 117 Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 A KK+FV GL I E + + YF FG I V V+ D T + RGFG Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166 Score = 82.6 bits (195), Expect = 1e-16 Identities = 36/81 (44%), Positives = 55/81 (67%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL T++ K +++Q+G I DVVVM D T+R +GFGFIT+ VD Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180 Query: 289 NNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE RAVP+E Sbjct: 181 HKTFHELNGKMVEVKRAVPKE 201 >At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing protein similar to GB:L02953 from [Xenopus laevis] (Nucleic Acids Res. 21, 999-1006 (1993)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 369 Score = 102 bits (245), Expect = 1e-22 Identities = 50/136 (36%), Positives = 83/136 (61%), Gaps = 1/136 (0%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLF+GG+ + TT + ++ ++GE+VD V+M D T +GFGF+T++ + V E Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLE 125 Query: 295 RPHKIDGRIVEPIRAVPR-EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471 H ID R V+ R +PR ++ +A + +K+FV GL +EE++L+ YF +G+I+ Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185 Query: 472 VSVVTDKETGKKRGFG 519 ++ D TG+ RGFG Sbjct: 186 HQIMYDHHTGRSRGFG 201 Score = 60.9 bits (141), Expect = 5e-10 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Frame = +1 Query: 88 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 D + TRK+F+GGL + LK ++ +G+I++ +M D T RS+GFGF+T+ Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208 Query: 268 HMVDEA-QNNRPHKIDGRIVEPIRAVPR 348 VD + + H++ + VE RA P+ Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRAEPK 236 >At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 411 Score = 97.5 bits (232), Expect = 5e-21 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 14/149 (9%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLF+GG+ + T + L+E + +GE+ +VM+D T R +GFGF+ +S ++D Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66 Query: 295 RPHKIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEED 432 + H ID R V+ RA+ REE +A KK+FV GL + +E+ Sbjct: 67 K-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 R+YF +G + V+++ D+ T + RGFG Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFG 154 Score = 77.8 bits (183), Expect = 4e-15 Identities = 35/98 (35%), Positives = 56/98 (57%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 LN S GD Y + T+K+F+GGL TD ++++E +G + DV +M D T R + Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151 Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPRE 351 GFGF+++ VD + H + G+ VE RA+P++ Sbjct: 152 GFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189 >At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 404 Score = 96.7 bits (230), Expect = 8e-21 Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 14/149 (9%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ + T ++ L+E++ +GE++ V VM++ T R +GFGF+ +S ++D + Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66 Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASAT--------------VKKLFVAGLKQDIEEED 432 + H ID R V+ RA+ REE S T KK+FV GL + ++ Sbjct: 67 K-HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 R YF T+G + ++ D+ T + RGFG Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFG 154 Score = 67.3 bits (157), Expect = 6e-12 Identities = 28/81 (34%), Positives = 49/81 (60%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL T + ++E +G + D V+M D T+R +GFGF+++ VD Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168 Query: 289 NNRPHKIDGRIVEPIRAVPRE 351 + H ++G+ VE RA+P++ Sbjct: 169 HKTFHDLNGKQVEVKRALPKD 189 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 91.5 bits (217), Expect = 3e-19 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFG 246 SE G + EP KLF+G L Y +L +EQ G EI +V+ +D T +S+GFG Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFG 157 Query: 247 FITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPR--EEIKRPEASATVKKLFVAGLKQD 417 F+T S ++A + +++GR + RA PR ++P +++V L D Sbjct: 158 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWD 217 Query: 418 IEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ L FS G +V VV+D+ETG+ RGFG Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251 Score = 44.4 bits (100), Expect = 5e-05 Identities = 18/57 (31%), Positives = 34/57 (59%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++++G L + L+ + + G++VD V+ D +T RS+GFGF+ S + V+ A Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264 >At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non-consensus TA donor splice site at exon 6 Length = 379 Score = 90.2 bits (214), Expect = 7e-19 Identities = 44/136 (32%), Positives = 75/136 (55%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RKL + G+ + LK++ ++G++ D +VMKD T RS+GFG++T++ A A Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62 Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471 H + RI+E A P+EE+++P T ++FVA + + E D R +F +G I Sbjct: 63 GE-HFLGNRILEVKVATPKEEMRQPAKKVT--RIFVARIPSSVSESDFRSHFERYGEITD 119 Query: 472 VSVVTDKETGKKRGFG 519 + + D + + RG G Sbjct: 120 LYMPKDYNSKQHRGIG 135 Score = 60.9 bits (141), Expect = 5e-10 Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%) Frame = +1 Query: 55 ILNMKPSESGDDYEEP-EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKR 231 IL +K + ++ +P + ++F+ + ++S + +E++GEI D+ + KD +K+ Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130 Query: 232 SKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRP 366 +G GFIT+S A V++ + H + G V RA P+E+ P Sbjct: 131 HRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKEDDHPP 174 Score = 56.4 bits (130), Expect = 1e-08 Identities = 29/89 (32%), Positives = 49/89 (55%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+G L + L++++ ++G I D + KDPK +GFGF+T+++ + D Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299 Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASAT 381 R H+I G+ V A P +E P A A+ Sbjct: 300 RSHEICGQEVAIDSATPLDE-AGPSAGAS 327 Score = 41.1 bits (92), Expect = 4e-04 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = +1 Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 P K+FV L Q+ +DLR+YF FG+I + D + RGFG Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFG 284 >At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 87.8 bits (208), Expect = 4e-18 Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Frame = +1 Query: 88 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 ++ EP KLF+G L Y +L +EQ G + V+ + +T +S+GFGF+T S Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201 Query: 268 HMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVK----KLFVAGLKQDIEEED 432 + A + + ++GR++ +A PR RPE + V +++V L D++ Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRG--SRPERAPRVYEPAFRVYVGNLPWDVDNGR 259 Query: 433 LREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L + FS G +V VV D+ETG+ RGFG Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFG 288 Score = 46.4 bits (105), Expect = 1e-05 Identities = 18/57 (31%), Positives = 37/57 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++++G L + + L++ + + G++V+ V+ D +T RS+GFGF+T S ++EA Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301 >At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 81.0 bits (191), Expect = 4e-16 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134 Query: 292 NRPHKIDGRI-VEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468 KIDGR+ V + A + A +++K++VA + D+ + L +F +G++ Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194 Query: 469 SVSVVTDKETGKKRGF 516 + DK TGK RGF Sbjct: 195 EGPLGFDKVTGKSRGF 210 Score = 48.4 bits (110), Expect = 3e-06 Identities = 20/51 (39%), Positives = 32/51 (62%) Frame = +1 Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ + +KLF+ GL D E LR FS++G++ V+ DK TGK +G+G Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/69 (21%), Positives = 30/69 (43%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RK+++ + + L + +G++ + + D T +S+GF Y A A Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226 Query: 292 NRPHKIDGR 318 + IDG+ Sbjct: 227 DPVKVIDGK 235 >At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 81.0 bits (191), Expect = 4e-16 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134 Query: 292 NRPHKIDGRI-VEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468 KIDGR+ V + A + A +++K++VA + D+ + L +F +G++ Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194 Query: 469 SVSVVTDKETGKKRGF 516 + DK TGK RGF Sbjct: 195 EGPLGFDKVTGKSRGF 210 Score = 48.4 bits (110), Expect = 3e-06 Identities = 20/51 (39%), Positives = 32/51 (62%) Frame = +1 Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ + +KLF+ GL D E LR FS++G++ V+ DK TGK +G+G Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYG 119 Score = 29.1 bits (62), Expect = 1.9 Identities = 15/69 (21%), Positives = 30/69 (43%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RK+++ + + L + +G++ + + D T +S+GF Y A A Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226 Query: 292 NRPHKIDGR 318 + IDG+ Sbjct: 227 DPVKVIDGK 235 >At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative Length = 358 Score = 80.6 bits (190), Expect = 6e-16 Identities = 34/84 (40%), Positives = 57/84 (67%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD Sbjct: 29 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 88 Query: 280 EAQNNRPHKIDGRIVEPIRAVPRE 351 + H+++G++VE AVP++ Sbjct: 89 KVLQKTFHELNGKMVEVKLAVPKD 112 Score = 46.8 bits (106), Expect = 9e-06 Identities = 20/45 (44%), Positives = 28/45 (62%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KK+FV GL + E + ++YF+ FG I V V+ D T + RGFG Sbjct: 33 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFG 77 >At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to RNA binding protein GI:18181938 from (Arabidopsis thaliana); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain 15450911 gb AY054536.1 Length = 360 Score = 79.8 bits (188), Expect = 1e-15 Identities = 35/90 (38%), Positives = 54/90 (60%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T+K+F+GGL TT+ K ++E++G DVVVM D T R +GFGF+TY V+ Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178 Query: 289 NNRPHKIDGRIVEPIRAVPREEIKRPEASA 378 + H++ + VE RA+P+E I+ +A Sbjct: 179 QSNFHELSDKRVEVKRAIPKEGIQSNNGNA 208 Score = 74.1 bits (174), Expect = 5e-14 Identities = 48/159 (30%), Positives = 84/159 (52%), Gaps = 24/159 (15%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLF+GG+ T++ +LK+++ ++G +++ VV K+ T + +GFGF+ ++ V +A + Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66 Query: 295 RPHKIDGRIVEPIRAVPREEI-KRP------------------EASAT-----VKKLFVA 402 H I G+ V+ +A+ + E+ ++P E S+ KK+FV Sbjct: 67 -THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVG 125 Query: 403 GLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 GL + EE+ + YF FG V V+ D T + RGFG Sbjct: 126 GLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFG 164 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 77.4 bits (182), Expect = 5e-15 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 1/138 (0%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T L++G LD TDS L E + Q G++V V V +D T+RS G+G++ Y+ A Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103 Query: 289 NNRPH-KIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 N ++GR + + +V +++ + V +F+ L + I+ + L E FS FG I Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRK----SGVGNIFIKNLDKSIDHKALHETFSAFGPI 159 Query: 466 VSVSVVTDKETGKKRGFG 519 +S V D +G+ +G+G Sbjct: 160 LSCKVAVD-PSGQSKGYG 176 Score = 49.2 bits (112), Expect = 2e-06 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 14/148 (9%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEA 285 +++ L +D L + + ++G V+M+D + K SKGFGF+ + A VD Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284 Query: 286 QNN----------RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435 + K R E ++ + +K + L+V L + + ++ L Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETE-LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343 Query: 436 REYFSTFGNIVSVSVVTDKETGKKRGFG 519 RE+F+ FG I S V+ D +G RG G Sbjct: 344 REHFAPFGTITSCKVMRD-PSGVSRGSG 370 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 73.7 bits (173), Expect = 7e-14 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L++G LD+ TDS L +++ + ++V V V +D T S G+G++ YS ++A Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107 Query: 298 PHK-IDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474 + ++G+++ I R+ R + V LFV L + ++ + L E FS G IVS Sbjct: 108 NYSYLNGKMIR-ITYSSRDSSAR---RSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163 Query: 475 SVVTDKETGKKRGFG 519 V TD G+ RG+G Sbjct: 164 KVATD-HMGQSRGYG 177 Score = 49.2 bits (112), Expect = 2e-06 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 14/147 (9%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDEAQ 288 +++ L TTD LK + Q+G I VVM+D K S+ FGF+ + A EA Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285 Query: 289 NNRPHKIDGRIVEPIRAVPREEI---KRPEASAT-------VKKLFVAGLKQDIEEEDLR 438 N + V + E+ +R E ++ L+V L + +E LR Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345 Query: 439 EYFSTFGNIVSVSVVTDKE-TGKKRGF 516 E F+ FG I S V+ D T K GF Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGF 372 Score = 47.2 bits (107), Expect = 7e-06 Identities = 27/92 (29%), Positives = 44/92 (47%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L++ LD TD L+E + ++G I VM+DP + SKG GF+ +S A N Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388 Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVKKL 393 K+ G + R+E +R + A ++ Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQM 420 >At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 70.9 bits (166), Expect = 5e-13 Identities = 32/81 (39%), Positives = 49/81 (60%) Frame = +1 Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255 E G++ K+F+GGL + T +++ ++EQ+GEIV+ VV+ D T RSKG+GF+T Sbjct: 10 EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69 Query: 256 YSQAHMVDEAQNNRPHKIDGR 318 + +A A N IDGR Sbjct: 70 FKEAEAAMRACQNMNPVIDGR 90 Score = 51.6 bits (118), Expect = 3e-07 Identities = 20/44 (45%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 K+FV GL + + + +R YF FG IV V+TDK TG+ +G+G Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYG 66 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 68.9 bits (161), Expect = 2e-12 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RK+F+ GL + T SL + ++Q+GEI D + D + +SKG+GFI + A Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187 Query: 292 NRPHKIDGRI-------VEPIRAVP-REEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447 KI R+ + P++ P + +K++V+ + DI+ + L E+F Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247 Query: 448 STFGNIVSVSVVTDKETGKKRGF 516 S FG I + DK TG+ +GF Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGF 270 Score = 37.1 bits (82), Expect = 0.007 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Frame = +1 Query: 100 PEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 PE+ RK+++ + L EF+ ++GEI + + D T R KGF Y Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESA 281 Query: 277 DEAQNNRPHK-IDGRIV 324 +A PHK +G ++ Sbjct: 282 KKAL-EEPHKTFEGHVL 297 >At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 68.5 bits (160), Expect = 3e-12 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193 Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411 A KI R+ PI A + + T KK++V+ + Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253 Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 +++ + L +FS FG I + DK TG+ +GF Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288 Score = 40.3 bits (90), Expect = 8e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +K+FV GL D + E L E F +G I V DK +GK +G+G Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184 Score = 36.7 bits (81), Expect = 0.009 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +1 Query: 91 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 + EHT +K+++ + L F+ ++GEI + + D T R KGF Y + Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296 Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342 A PHK +G I+ +A+ Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321 >At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 68.5 bits (160), Expect = 3e-12 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193 Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411 A KI R+ PI A + + T KK++V+ + Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253 Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 +++ + L +FS FG I + DK TG+ +GF Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288 Score = 40.3 bits (90), Expect = 8e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +K+FV GL D + E L E F +G I V DK +GK +G+G Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184 Score = 36.7 bits (81), Expect = 0.009 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +1 Query: 91 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 + EHT +K+++ + L F+ ++GEI + + D T R KGF Y + Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296 Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342 A PHK +G I+ +A+ Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321 >At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 68.5 bits (160), Expect = 3e-12 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193 Query: 274 VDEAQNNRPHKIDGRIV-------------EPIRAVP-REEIKRPEASATVKKLFVAGLK 411 A KI R+ PI A + + T KK++V+ + Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253 Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 +++ + L +FS FG I + DK TG+ +GF Sbjct: 254 AELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288 Score = 40.3 bits (90), Expect = 8e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +K+FV GL D + E L E F +G I V DK +GK +G+G Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184 Score = 36.7 bits (81), Expect = 0.009 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +1 Query: 91 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 + EHT +K+++ + L F+ ++GEI + + D T R KGF Y + Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296 Query: 268 HMVDEAQNNRPHK-IDGRIVEPIRAV 342 A PHK +G I+ +A+ Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 68.1 bits (159), Expect = 3e-12 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291 +L++G L Y T S L + + + G +VDV ++ D T RS+GFGF+T EA Q Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176 Query: 292 NRPHKIDGRIVE-PIRAVPR---EEIKRPEASATVK-------KLFVAGLKQDIEEEDLR 438 +I GR V+ VPR E+ R + + K++ L ++ + L+ Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236 Query: 439 EYFSTFGNIVSVSVVTDKETGKKRGFG 519 + F ++ V+ ++ TG+ RGFG Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFG 263 Score = 42.3 bits (95), Expect = 2e-04 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +1 Query: 55 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234 ++ K ++ Y + H K++ G L + T LK+ + ++ V+ + T RS Sbjct: 202 VMRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259 Query: 235 KGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPIRAVPREE 354 +GFGFI++ A V A +++GR + A RE+ Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 67.7 bits (158), Expect = 4e-12 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 2/148 (1%) Frame = +1 Query: 82 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 G E +++GGLD + ++ L E + Q G +V+V V KD T + +GFI Y Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYR 74 Query: 262 QAHMVDEA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438 D A + K+ G+ PIR + K+ + LF+ L D++E+ L Sbjct: 75 SEEDADYAIKVLNMIKLHGK---PIRVNKASQDKK--SLDVGANLFIGNLDPDVDEKLLY 129 Query: 439 EYFSTFGNIVS-VSVVTDKETGKKRGFG 519 + FS FG I S ++ D +TG RGFG Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFG 157 Score = 42.7 bits (96), Expect = 1e-04 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = +1 Query: 64 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV-DVVVMKDPKTKRSKG 240 ++ +++ D + + LFIG LD + L + + +G I + +M+DP T S+G Sbjct: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155 Query: 241 FGFITYSQAHMVDEA 285 FGFI+Y D A Sbjct: 156 FGFISYDSFEASDAA 170 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 65.7 bits (153), Expect = 2e-11 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 1/150 (0%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+ Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166 Query: 253 TYSQAHMVDEAQNNRPHKID-GRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429 Y+ + D A ++I P++ V + +R KLFV L + E+ Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQ-VRYADGERERIGTLEFKLFVGSLNKQATEK 225 Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ E F FG++ V ++ D E + RG G Sbjct: 226 EVEEIFLQFGHVEDVYLMRD-EYRQSRGCG 254 Score = 46.0 bits (104), Expect = 2e-05 Identities = 19/49 (38%), Positives = 35/49 (71%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 65.7 bits (153), Expect = 2e-11 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 1/150 (0%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+ Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166 Query: 253 TYSQAHMVDEAQNNRPHKID-GRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429 Y+ + D A ++I P++ V + +R KLFV L + E+ Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQ-VRYADGERERIGTLEFKLFVGSLNKQATEK 225 Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ E F FG++ V ++ D E + RG G Sbjct: 226 EVEEIFLQFGHVEDVYLMRD-EYRQSRGCG 254 Score = 46.0 bits (104), Expect = 2e-05 Identities = 19/49 (38%), Positives = 35/49 (71%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYS 259 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 63.3 bits (147), Expect = 1e-10 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 14/147 (9%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294 +++ L TTD LK + ++G+I VVMKD + K SKGFGF+ + A A ++ Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 89 Query: 295 RPHKID------GRIVE------PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438 HK D GR + +R + +K L+V L I +E L+ Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149 Query: 439 EYFSTFGNIVSVSVVTDKE-TGKKRGF 516 E FS FG + S V+ D T K GF Sbjct: 150 EIFSPFGTVTSSKVMRDPNGTSKGSGF 176 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 63.3 bits (147), Expect = 1e-10 Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 E+PE+ + FIGGL + T+D L++ +E++G +V+ V+ D + RS+GFGFIT+ + Sbjct: 3 EDPEY--RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60 Query: 274 VDEA-QNNRPHKIDGRIVEPIRAVPRE 351 +DEA +DGR + +A P + Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQ 87 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 63.3 bits (147), Expect = 1e-10 Identities = 28/68 (41%), Positives = 47/68 (69%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91 Query: 295 RPHKIDGR 318 ++DG+ Sbjct: 92 AIKEMDGK 99 Score = 50.4 bits (115), Expect = 7e-07 Identities = 19/44 (43%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLFV GL ++ L++ F++FG + +V+ D+ETG+ RGFG Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 79 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 63.3 bits (147), Expect = 1e-10 Identities = 28/68 (41%), Positives = 47/68 (69%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91 Query: 295 RPHKIDGR 318 ++DG+ Sbjct: 92 AIKEMDGK 99 Score = 50.4 bits (115), Expect = 7e-07 Identities = 19/44 (43%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLFV GL ++ L++ F++FG + +V+ D+ETG+ RGFG Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFG 79 >At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 285 Score = 62.9 bits (146), Expect = 1e-10 Identities = 28/68 (41%), Positives = 43/68 (63%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T +L++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A + Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84 Query: 295 RPHKIDGR 318 IDGR Sbjct: 85 PTPIIDGR 92 Score = 51.2 bits (117), Expect = 4e-07 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +1 Query: 325 EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 504 +P+ + P T K+FV GL + + E LR++F +G I+ V+ DK TG+ Sbjct: 4 QPVPGSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63 Query: 505 KRGFG 519 +G+G Sbjct: 64 SKGYG 68 >At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 347 Score = 62.9 bits (146), Expect = 1e-10 Identities = 28/68 (41%), Positives = 45/68 (66%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73 Query: 295 RPHKIDGR 318 IDGR Sbjct: 74 ATPVIDGR 81 Score = 47.2 bits (107), Expect = 7e-06 Identities = 18/47 (38%), Positives = 31/47 (65%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K+FV GL + +E ++++F FG I+ V+TDK +G+ +G+G Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57 >At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 242 Score = 62.9 bits (146), Expect = 1e-10 Identities = 28/68 (41%), Positives = 45/68 (66%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73 Query: 295 RPHKIDGR 318 IDGR Sbjct: 74 ATPVIDGR 81 Score = 47.2 bits (107), Expect = 7e-06 Identities = 18/47 (38%), Positives = 31/47 (65%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K+FV GL + +E ++++F FG I+ V+TDK +G+ +G+G Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57 >At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); similar to GB:AAC33496 Length = 249 Score = 62.9 bits (146), Expect = 1e-10 Identities = 28/68 (41%), Positives = 45/68 (66%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A + Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73 Query: 295 RPHKIDGR 318 IDGR Sbjct: 74 ATPVIDGR 81 Score = 47.2 bits (107), Expect = 7e-06 Identities = 18/47 (38%), Positives = 31/47 (65%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K+FV GL + +E ++++F FG I+ V+TDK +G+ +G+G Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57 >At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 100 Score = 62.5 bits (145), Expect = 2e-10 Identities = 29/70 (41%), Positives = 42/70 (60%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+++ GL + T L ++E++GEIV V+ D T+RSKGFGF+T+ + A N Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69 Query: 295 RPHKIDGRIV 324 H IDGR V Sbjct: 70 PNHTIDGRTV 79 Score = 40.3 bits (90), Expect = 8e-04 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 K++VAGL E L YF FG IV VV D T + +GFG Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFG 53 >At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 244 Score = 62.5 bits (145), Expect = 2e-10 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67 Query: 295 RPHKIDGR 318 IDGR Sbjct: 68 PAPVIDGR 75 Score = 50.4 bits (115), Expect = 7e-07 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K+FV GL + + LR YF FG+IV V+TDK +G+ +G+G Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYG 51 >At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 62.5 bits (145), Expect = 2e-10 Identities = 28/68 (41%), Positives = 44/68 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A + Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67 Query: 295 RPHKIDGR 318 IDGR Sbjct: 68 PAPVIDGR 75 Score = 50.4 bits (115), Expect = 7e-07 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K+FV GL + + LR YF FG+IV V+TDK +G+ +G+G Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYG 51 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 62.1 bits (144), Expect = 2e-10 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 22/157 (14%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291 KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S V+ AQ Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 292 NRPHKIDGRIVEPIRAVP---REE--IKRPEAS----------------ATVKKLFVAGL 408 +++DGR + P RE+ + P +S + +++V L Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211 Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +++ L FS G +V V+ D+++G+ +GFG Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 248 Score = 49.2 bits (112), Expect = 2e-06 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291 ++++G L + D +L+ + + G++V+ V+ D + RSKGFGF+TY + V A ++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 292 NRPHKIDGRIVEPIRAVPR 348 +DGR + A R Sbjct: 265 LDGADLDGRQIRVSEAEAR 283 >At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 271 Score = 62.1 bits (144), Expect = 2e-10 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77 Query: 295 RPHKIDGR 318 IDGR Sbjct: 78 PNPVIDGR 85 Score = 53.6 bits (123), Expect = 8e-08 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + P T K+FV GL + +++R YF FG I+ ++TDK TGK +G+G Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61 >At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif-containing protein SEB-4 GI:8895698 from [Xenopus laevis]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 287 Score = 62.1 bits (144), Expect = 2e-10 Identities = 25/68 (36%), Positives = 44/68 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A + Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77 Query: 295 RPHKIDGR 318 IDGR Sbjct: 78 PNPVIDGR 85 Score = 53.6 bits (123), Expect = 8e-08 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + P T K+FV GL + +++R YF FG I+ ++TDK TGK +G+G Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61 >At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 272 Score = 61.7 bits (143), Expect = 3e-10 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 K+F+G L +RTT L+ ++EQ+G++VD V+ + RSKG+GFIT+ V QN Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72 Query: 292 NRPHKIDGR 318 ++P IDGR Sbjct: 73 SKP-IIDGR 80 Score = 43.2 bits (97), Expect = 1e-04 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +1 Query: 382 VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 V K+FV L +DLR YF FG +V +VV++ G+ +G+G Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYG 56 >At5g61030.1 68418.m07659 RNA-binding protein, putative similar to RNA-binding protein from [Solanum tuberosum] GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 309 Score = 61.3 bits (142), Expect = 4e-10 Identities = 29/68 (42%), Positives = 46/68 (67%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 KLFIGG+ Y + SL+E + ++GE+VD V+ D +T RS+GFGF+T++ + EA ++ Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSS----EAASS 96 Query: 295 RPHKIDGR 318 +DGR Sbjct: 97 AIQALDGR 104 Score = 53.2 bits (122), Expect = 1e-07 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLF+ G+ ++E+ LRE F+ +G +V V+ D+ETG+ RGFG Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFG 84 >At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 374 Score = 60.9 bits (141), Expect = 5e-10 Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Frame = +1 Query: 73 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249 S DD E P T+KLFI GL + T++ +L+ +E +GE+V+V ++ D +KRSKG+ F Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327 Query: 250 ITYSQAHMVDEAQNNRPHKIDGRIV 324 + Y+ +EA +++G+I+ Sbjct: 328 LEYT----TEEAAGTALKEMNGKII 348 Score = 39.5 bits (88), Expect = 0.001 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 KKLF+ GL E+ LR F FG +V V ++ DK + + +G+ Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325 >At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. Length = 258 Score = 60.9 bits (141), Expect = 5e-10 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 3/138 (2%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 KL+ G L Y ++L + + + E+V+V+ +D T +S+GF F+T S + Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIII 143 Query: 289 NNRPH-KIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 +N + GR ++ A + K P T KLFV L + E L F G++ Sbjct: 144 DNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203 Query: 466 VSVSVVTDKETGKKRGFG 519 V VV D +TG+ RG+G Sbjct: 204 VGARVVFDGDTGRSRGYG 221 Score = 52.8 bits (121), Expect = 1e-07 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 91 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQA 267 Y E EH KLF+G L + T SL + + G++V V+ D T RS+G+GF+ Y S+A Sbjct: 172 YPETEH--KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229 Query: 268 HMVDEAQNNRPHKIDGRIV 324 M ++ +++GR + Sbjct: 230 EMETALESLDGFELEGRAI 248 Score = 31.1 bits (67), Expect = 0.47 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 +A KL+ L +++ L + F N V V+ +++TG+ RGF Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGF 128 >At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 60.9 bits (141), Expect = 5e-10 Identities = 26/76 (34%), Positives = 47/76 (61%) Frame = +1 Query: 91 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAH 270 + + HT K+F+GGL + T ++ +++Q+GEI++ V++ D T +SKG+GF+T+ + Sbjct: 11 FGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69 Query: 271 MVDEAQNNRPHKIDGR 318 A + IDGR Sbjct: 70 SATRAVADPNPVIDGR 85 Score = 52.4 bits (120), Expect = 2e-07 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + P T K+FV GL + +++R YF FG I+ ++TDK TGK +G+G Sbjct: 8 RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61 >At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing protein Length = 527 Score = 60.1 bits (139), Expect = 9e-10 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Frame = +1 Query: 97 EPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 +PE R +F + + T+ + EF+ + G++ DV ++ D ++RSKG G+I + Sbjct: 162 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 221 Query: 274 VDEAQNNRPHKIDGRIVEPIRAVPREEIKR--PEASATV-------KKLFVAGLKQDIEE 426 V A G +P+ P E K S TV +KL+V L ++ E Sbjct: 222 VPMAIALSGQLFLG---QPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSE 278 Query: 427 EDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LR+ F FG + V + D ETG+ +GFG Sbjct: 279 LQLRQIFEAFGPVELVQLPLDPETGQCKGFG 309 Score = 47.2 bits (107), Expect = 7e-06 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ- 288 RKL++G L + ++ L++ +E +G + V + DP+T + KGFGFI + Q AQ Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324 Query: 289 -NNRPHKIDGRIVE 327 N +I GR ++ Sbjct: 325 ALNGKLEIAGRTIK 338 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 60.1 bits (139), Expect = 9e-10 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 ++++G L TTD L+E + +G +VD +VM+D T RS+GFGF+TYS + A + Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63 Query: 295 RPHK-IDGRIV 324 K ++GR V Sbjct: 64 MDGKELNGRRV 74 Score = 40.3 bits (90), Expect = 8e-04 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +++V L ++ LRE FS +GN+V V+ D+ T + RGFG Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFG 47 >At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile: PF00076 RNA recognition motif Length = 636 Score = 59.7 bits (138), Expect = 1e-09 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 ++ LF G L Y+ S ++ F+++ GE+VDV + KG+G I ++ +A Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS-FKGYGHIEFASPEEAQKAL 441 Query: 289 NNRPHKIDGRIVE----PIRAVPREEIK-RPEASATVKKLFVAGLKQDIEEED----LRE 441 + GR V R PR R + + ++V G + E++ LR Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRS 501 Query: 442 YFSTFGNIVSVSVVTDKETGKKRGF 516 +FS G + V V TD+ETG RGF Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGF 526 Score = 30.3 bits (65), Expect = 0.82 Identities = 23/97 (23%), Positives = 38/97 (39%) Frame = +1 Query: 61 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240 N P G+ + + F L L+ + + GE+ V V D +T S+G Sbjct: 466 NSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRG 525 Query: 241 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPRE 351 F +I + DEA +I G + + PR+ Sbjct: 526 FAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRD 560 >At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein from {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum sativum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 155 Score = 59.7 bits (138), Expect = 1e-09 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL T LKE + +G+IVD VV+ D ++ S+GFGF+TY + + A Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96 Query: 295 RPHK-IDGRIV 324 +K +DGRI+ Sbjct: 97 MQNKELDGRII 107 Score = 50.0 bits (114), Expect = 9e-07 Identities = 24/49 (48%), Positives = 30/49 (61%) Frame = +1 Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 S T K+FV GL + E L+E F +FG IV VV D+E+G RGFG Sbjct: 32 SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFG 80 >At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386 Length = 274 Score = 59.3 bits (137), Expect = 2e-09 Identities = 26/68 (38%), Positives = 42/68 (61%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T +L+ ++Q+G+I++ VV+ D T RSKG+GF+T+ A + Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84 Query: 295 RPHKIDGR 318 IDGR Sbjct: 85 PTPIIDGR 92 Score = 52.4 bits (120), Expect = 2e-07 Identities = 21/55 (38%), Positives = 33/55 (60%) Frame = +1 Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + P T K+FV GL + + E LR +F +G+I+ V+TDK TG+ +G+G Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 58.4 bits (135), Expect = 3e-09 Identities = 27/58 (46%), Positives = 40/58 (68%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 KLFIGGL + TT+ L E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 58.4 bits (135), Expect = 3e-09 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 + F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 292 NRPHKIDGRIV 324 ++DGR++ Sbjct: 67 MNGKELDGRVI 77 Score = 47.6 bits (108), Expect = 5e-06 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + FV GL +EDL+ FS FG+++ ++ D+E+G+ RGFG Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 58.4 bits (135), Expect = 3e-09 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 + F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 292 NRPHKIDGRIV 324 ++DGR++ Sbjct: 67 MNGKELDGRVI 77 Score = 47.6 bits (108), Expect = 5e-06 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + FV GL +EDL+ FS FG+++ ++ D+E+G+ RGFG Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 58.4 bits (135), Expect = 3e-09 Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 + F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 292 NRPHKIDGRIV 324 ++DGR++ Sbjct: 67 MNGKELDGRVI 77 Score = 47.6 bits (108), Expect = 5e-06 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + FV GL +EDL+ FS FG+++ ++ D+E+G+ RGFG Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 58.4 bits (135), Expect = 3e-09 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 3/140 (2%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG---FITYSQAHMVD 279 T L++G L T+ L + + ++ + V + KD + RS +G F++ A++ Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459 E +NN ++G+++ + +V + +R V +FV L + + L++ F FG Sbjct: 83 EKKNNS--LLNGKMIRVMWSVRAPDARRNG----VGNVFVKNLPESVTNAVLQDMFKKFG 136 Query: 460 NIVSVSVVTDKETGKKRGFG 519 NIVS V T E GK RG+G Sbjct: 137 NIVSCKVAT-LEDGKSRGYG 155 Score = 53.2 bits (122), Expect = 1e-07 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%) Frame = +1 Query: 85 DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 D + E L++ LD ++ L+E + ++G+IV + + KD + + +G+ F+ + Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDN 250 Query: 265 AHMVDEAQNN-RPHKIDGRIVEPIRA---VPREEIKRPEAS---------ATVKKLFVAG 405 A K + + RA RE++ R + A V ++V Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKN 310 Query: 406 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + + EE+LR++FS G I S ++ D E GK +GFG Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFG 347 Score = 51.6 bits (118), Expect = 3e-07 Identities = 34/128 (26%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVD--VVVMKDPKTKRSKGFGFITYSQAHMVDEA-Q 288 +F+ L T++ L++ ++++G IV V ++D K S+G+GF+ + Q A Q Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK---SRGYGFVQFEQEDAAHAAIQ 170 Query: 289 NNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468 + + + + + + + +PE T L++ L D+ E+ LRE F+ FG IV Sbjct: 171 TLNSTIVADKEIYVGKFMKKTDRVKPEEKYT--NLYMKNLDADVSEDLLREKFAEFGKIV 228 Query: 469 SVSVVTDK 492 S+++ D+ Sbjct: 229 SLAIAKDE 236 Score = 35.9 bits (79), Expect = 0.017 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 +++ ++ T+ L++ + Q G I +M D K K SKGFGF+ +S Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352 >At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar to RNA-binding protein GB:S46286 from [Nicotiana sylvestris] Length = 289 Score = 58.4 bits (135), Expect = 3e-09 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GG+ Y T + L+E + ++GE+VD ++ D +T RS+GF F+T++ A Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94 Query: 295 RPHKIDGRIVEPIRAVPR 348 + GR + A R Sbjct: 95 DGQDLHGRRIRVNYATER 112 Score = 49.2 bits (112), Expect = 2e-06 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 K+FV G+ +E LRE FS +G +V ++ D+ETG+ RGF Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGF 77 >At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 169 Score = 58.0 bits (134), Expect = 4e-09 Identities = 26/69 (37%), Positives = 43/69 (62%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+++GGL + T L F++++GEI+ V V+ D +T RS+G+GF+T+ A A + Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73 Query: 295 RPHKIDGRI 321 I+GRI Sbjct: 74 PNPTIEGRI 82 Score = 44.8 bits (101), Expect = 4e-05 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 T K++V GL +E L +F FG I+ V+VV D+ET + +G+G Sbjct: 11 TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYG 57 >At2g37510.1 68415.m04600 RNA-binding protein, putative similar to SP|P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein {Zea mays}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 142 Score = 58.0 bits (134), Expect = 4e-09 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +LF+ GL TT+ L++ + +G++VD V+ D + RSKGFGF+TY+ ++A+ Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94 Query: 295 RPHK-IDGRIVEPIRAVPREEIKRP 366 K +DG ++ A PRE +RP Sbjct: 95 MNAKFLDGWVIFVDPARPREP-RRP 118 Score = 48.4 bits (110), Expect = 3e-06 Identities = 19/50 (38%), Positives = 35/50 (70%) Frame = +1 Query: 370 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ T +LFV+GL + E L++ F++FG +V V+TD+++G+ +GFG Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFG 78 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 57.6 bits (133), Expect = 5e-09 Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 13/164 (7%) Frame = +1 Query: 67 KPSESGDDYEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243 K + + +PE R +F + R T+ + EF+ + G++ DV ++ D ++RS+G Sbjct: 166 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 225 Query: 244 GFITY------------SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387 G++ + S ++ + +P + + +V+ A S + Sbjct: 226 GYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 285 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +L+V L ++ E+DLR+ F +FG++ V V D ETG +GFG Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFG 328 Score = 44.4 bits (100), Expect = 5e-05 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R+L++G L ++ L++ +E +G + V V +D +T KGFGF+ +++ A N Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN 343 Query: 292 -NRPHKIDGRIVEPIRAVPREEIKRPEASAT 381 N +I GR ++ + E+ PEA T Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEV--PEAGQT 372 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 57.6 bits (133), Expect = 5e-09 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 SESG P T +++ L TD LK+ + ++G+I VVMKD ++ S+ FGF+ Sbjct: 216 SESG---AVPSFTN-VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFV 270 Query: 253 TY---SQAHMVDEAQN-----------NRPHKIDGRIVEPIRAVPREEIKRPEASATVKK 390 + A + E N R K R E R +E I R E Sbjct: 271 NFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE-KLQGSN 329 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L++ L + +E L+E FS +GN+ S V+ + + G RGFG Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFG 371 Score = 52.4 bits (120), Expect = 2e-07 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294 +FI LD + +L E + +G I+ V D RSKG+GF+ + + A + Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 295 RPHKIDGRIVEPIRAVPREEIKRPEASA--TVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468 ++ + V V R++ R E+ A + ++V L ++I +++L++ F +G+I Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 252 Query: 469 SVSVVTDKETGKKRGFG 519 S V+ D ++G R FG Sbjct: 253 SAVVMKD-QSGNSRSFG 268 Score = 39.5 bits (88), Expect = 0.001 Identities = 26/93 (27%), Positives = 44/93 (47%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L++ LD D LKE + ++G + VM + + S+GFGF+ YS A Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEM 388 Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVKKLF 396 K+ GR +P+ + ++ E A ++ LF Sbjct: 389 NGKMIGR--KPLYVALAQ--RKEERQAHLQSLF 417 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 57.2 bits (132), Expect = 6e-09 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291 ++F+GGL TD L+ + ++G+I+D +M + T RS+GFGFIT++ +DE+ + Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67 Query: 292 NRPHKIDGRIVEPIRAVPR 348 R++ RA P+ Sbjct: 68 MHGRDFGDRVISVNRAEPK 86 Score = 47.6 bits (108), Expect = 5e-06 Identities = 17/44 (38%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++FV GL ++ + DL FS FG+I+ ++ +++TG+ RGFG Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFG 51 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 57.2 bits (132), Expect = 6e-09 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 + F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 292 NRPHKIDGRIV 324 +DGR + Sbjct: 69 MNGQDLDGRSI 79 Score = 41.9 bits (94), Expect = 3e-04 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +1 Query: 370 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 AS V+ + FV GL ++ L F+ +G+++ ++ D+ETG+ RGFG Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFG 52 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 57.2 bits (132), Expect = 6e-09 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 + F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D + Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 292 NRPHKIDGRIV 324 +DGR + Sbjct: 69 MNGQDLDGRSI 79 Score = 41.9 bits (94), Expect = 3e-04 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +1 Query: 370 ASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 AS V+ + FV GL ++ L F+ +G+++ ++ D+ETG+ RGFG Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFG 52 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 57.2 bits (132), Expect = 6e-09 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 16/144 (11%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258 Query: 295 RPH-KIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 429 K R + A PR+ + RPE +FV GL + +E Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318 Query: 430 DLREYFSTFGNIVSVSVVTDKETG 501 DL++ F+ FG IVSV + K G Sbjct: 319 DLKQPFNEFGEIVSVKIPVGKGCG 342 Score = 45.2 bits (102), Expect = 3e-05 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 + +++G L + ++ L + E IV V V+++ S+G+GF+ + + D+ Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160 Query: 286 QNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS-T 453 +P R A KR E + +FV L D+ + L E FS Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220 Query: 454 FGNIVSVSVVTDKETGKKRGFG 519 + ++ + VV D TG+ +G+G Sbjct: 221 YPSVKAAKVVLDANTGRSKGYG 242 Score = 38.7 bits (86), Expect = 0.002 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 +F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 355 >At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 153 Score = 56.8 bits (131), Expect = 8e-09 Identities = 23/49 (46%), Positives = 37/49 (75%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 Score = 51.2 bits (117), Expect = 4e-07 Identities = 20/44 (45%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLF+ GL ++ LR+ F+ FG++V V+ D+ETG+ RGFG Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFG 79 >At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 Length = 158 Score = 56.8 bits (131), Expect = 8e-09 Identities = 23/49 (46%), Positives = 37/49 (75%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84 Score = 51.2 bits (117), Expect = 4e-07 Identities = 20/44 (45%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLF+ GL ++ LR+ F+ FG++V V+ D+ETG+ RGFG Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFG 79 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 56.4 bits (130), Expect = 1e-08 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 +FI LD + +L E + +G I+ V D T RSKG+GF+ + + +E+ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAA 192 Query: 298 PHKIDGRIVEPIRA-----VPREEIKRPEASATVK--KLFVAGLKQDIEEEDLREYFSTF 456 K++G ++ + + R+E R E + T + ++V L ++I E++LR+ F F Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252 Query: 457 GNIVSVSVVTDKETGKKRGFG 519 G ++S +VV ++G R FG Sbjct: 253 G-VISSAVVMRDQSGNSRCFG 272 Score = 46.8 bits (106), Expect = 9e-06 Identities = 29/103 (28%), Positives = 45/103 (43%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 E L++ LD D LKE + ++G + VM +P+ S+GFGF+ YS Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEA 385 Query: 277 DEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAG 405 A + K+ GR I R+E +R A ++ G Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPG 428 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 56.0 bits (129), Expect = 1e-08 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 291 KL++ GL +RTT+ +L++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137 Query: 292 NRPHKIDGRIVEPIRAVPREEIKR 363 +DGR++ A R ++ R Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSR 161 Score = 42.3 bits (95), Expect = 2e-04 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Frame = +1 Query: 364 PEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 P +S+ K KL+V+GL E+ LR+ F FGN++ +++V DK + +GF Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGF 120 >At3g46020.1 68416.m04979 RNA-binding protein, putative similar to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis}; SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 102 Score = 55.6 bits (128), Expect = 2e-08 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +LF+ L TTD SL++ + +G+I + +++D +T+R KGFGFIT+ +A + Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67 Query: 295 RPHKI-DGRIVEPIRAVPREEIK 360 KI DGR++ A EE++ Sbjct: 68 LDGKIVDGRLIFVEVAKNAEEVR 90 Score = 38.7 bits (86), Expect = 0.002 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +LFV+ L ++ LR+ FS FG I ++ D ET + +GFG Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFG 51 >At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 55.2 bits (127), Expect = 3e-08 Identities = 23/68 (33%), Positives = 43/68 (63%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+F+GGL + T ++ + + ++G+I++ V++ D T+RSKG+GF+T+ A A + Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77 Query: 295 RPHKIDGR 318 I+GR Sbjct: 78 STPIINGR 85 Score = 39.9 bits (89), Expect = 0.001 Identities = 15/44 (34%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 K+FV GL D +E + ++F +G+I+ +++DK T + +G+G Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 55.2 bits (127), Expect = 3e-08 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282 + + L++G L + ++ L + GE+ V V+++ T +S+G+GF+ + +E Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164 Query: 283 AQNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS- 450 N + +P R A KR + +FV L D+ + L E FS Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224 Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519 + ++ S VV D TG+ +G+G Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYG 247 Score = 47.2 bits (107), Expect = 7e-06 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 30/158 (18%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ-- 288 +F+G L TD L E F +++ + V+ D T RSKG+GF+ + + A Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263 Query: 289 ------NNRPHKIDGRIVEPIRAVPREEIKRPEA---------------------SATVK 387 +NR ++ I P RA+ ++ +A +T Sbjct: 264 MNGAYCSNRQMRVG--IATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 +FV G+ D+ +EDLR+ FS FG +VSV + K G Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359 Score = 35.1 bits (77), Expect = 0.029 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 +F+GG+D D L++ + Q+GE+V V K KG GF+ ++ ++A Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSV------KIPVGKGCGFVQFADRKSAEDA 372 >At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein GI:1279562 from [Medicago sativa] Length = 557 Score = 55.2 bits (127), Expect = 3e-08 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 ++ LF L + + ++ F+++ GE+VDV + +GFG + ++ + +A Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355 Query: 289 NNRPHKIDGRIVEPIRAVPR-EEIKRPEAS------------ATVKKLFVAGLKQDIEEE 429 + GR + A R E +RP + KK+FV G + E+ Sbjct: 356 EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSED 415 Query: 430 D----LREYFSTFGNIVSVSVVTDKETGKKRG 513 D LRE+FS+ G I +VSV D++TG +G Sbjct: 416 DIKNTLREHFSSCGEIKNVSVPIDRDTGNSKG 447 Score = 33.1 bits (72), Expect = 0.12 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +1 Query: 112 RKLFIGGLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 +K+F+ G D ++ ++L+E + GEI +V V D T SKG ++ +S+ Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 54.8 bits (126), Expect = 3e-08 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Frame = +1 Query: 70 PSESGDDYEEP---EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240 P Y P E R L+IG L Y ++ L + Q GE+V V V+++ T + +G Sbjct: 7 PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG 66 Query: 241 FGFITY-SQAHMVDEAQNNRPHKIDG-RIVEPIRAVPREEIKRPEASATVKKLFVAGLKQ 414 +GFI + S A Q ++ G + + ++ +A +FV L Sbjct: 67 YGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPD-HSIFVGDLAP 125 Query: 415 DIEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFG 519 D+ + L+E F + ++ VVTD TG+ +G+G Sbjct: 126 DVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYG 161 Score = 49.2 bits (112), Expect = 2e-06 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 31/179 (17%) Frame = +1 Query: 58 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231 LN SG + P+H+ +F+G L TD L+E F + + V+ DP T R Sbjct: 99 LNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156 Query: 232 SKGFGFITYSQAHMVDEAQ--------NNRPHKIDG---------------RIVEPIR-- 336 SKG+GF+ +++ + A + RP +I + V P+ Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216 Query: 337 ---AVP-REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 A P + + PE+ T + VA L Q++ EE+L++ FS G ++ V + K G Sbjct: 217 SAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYG 275 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 54.0 bits (124), Expect = 6e-08 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 12/151 (7%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282 + + +++ L TD L + Q+G + VVVM+D RS+GFGF+ + + Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKK 257 Query: 283 AQNNR-PHKIDGRIVEPIRAVPREE----IKRPEASATVKK-------LFVAGLKQDIEE 426 A + ++ + + +A+ ++E +K+ + + K L+V L + + E Sbjct: 258 AMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317 Query: 427 EDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LRE F +G IVS V+ E G+ +GFG Sbjct: 318 TRLREIFGCYGQIVSAKVMC-HENGRSKGFG 347 Score = 37.1 bits (82), Expect = 0.007 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 294 L++ L ++ L+E + +G+IV VM + RSKGFGF+ +S +A+ Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYL 364 Query: 295 RPHKIDGR-IVEPIRAVPREEIKR 363 +DG+ IV + + IKR Sbjct: 365 NGFLVDGKPIVVRVAERKEDRIKR 388 Score = 29.9 bits (64), Expect = 1.1 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGK 504 S+ L+V L D+ E+DL + FS +VSV + + TGK Sbjct: 17 SSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGK 60 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 54.0 bits (124), Expect = 6e-08 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 16/144 (11%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260 Query: 295 RPH-KIDGRIVEPIRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 429 K R + A PR+ R E +FV GL + +E Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320 Query: 430 DLREYFSTFGNIVSVSVVTDKETG 501 DL++ FS FG IVSV + K G Sbjct: 321 DLKQPFSEFGEIVSVKIPVGKGCG 344 Score = 41.9 bits (94), Expect = 3e-04 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Frame = +1 Query: 187 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPIR---AVPREEI 357 EIV + V+++ S+G+GF+ + + D+ +P R A Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFG 519 KR E + +FV L D+ + L E FS + ++ + VV D TG+ +G+G Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYG 244 Score = 38.7 bits (86), Expect = 0.002 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 +F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 357 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 53.2 bits (122), Expect = 1e-07 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 14/150 (9%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 258 E PEHT +F+G L TD L E ++ + + V+ D T RSKG+GF+ + Sbjct: 169 EGPEHT--VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226 Query: 259 ----SQAHMVDEAQNNRPHKI-DGRIVEPIRAVP----REEIKRPEASATVKKLFVAGLK 411 + M + ++RP + +P+ P + E+ T +FV + Sbjct: 227 EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVD 286 Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 Q + E+DL+ F FG +V V + K G Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316 Score = 43.2 bits (97), Expect = 1e-04 Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 4/140 (2%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDE 282 R L+IG L ++ L + GE V+++ + S+G+GFI + + A + Sbjct: 80 RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQ 139 Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFG 459 N P + + +R +A +FV L D+ + L E F + + Sbjct: 140 TYNGAPMPSSEQAFR-LNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYS 198 Query: 460 NIVSVSVVTDKETGKKRGFG 519 ++ VV D+ TG+ +G+G Sbjct: 199 SVKGAKVVNDRTTGRSKGYG 218 Score = 35.9 bits (79), Expect = 0.017 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = +1 Query: 58 LNMKPSE----SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 225 L M+P+ G+ E +F+G +D T+ LK + Q+GE+V V K P Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV---KIPAG 312 Query: 226 KRSKGFGFITYSQAHMVDEA 285 KR GF+ Y+ ++A Sbjct: 313 KRC---GFVQYANRACAEQA 329 >At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing protein low similarity to nucleolar phosphoprotein (Nopp52), Tetrahymena thermophila, EMBL:TT51555; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 597 Score = 53.2 bits (122), Expect = 1e-07 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY------SQAHMV 276 KL++GG+ Y++T+ ++ ++ G I+ V P+ G FIT+ +A Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221 Query: 277 DE-AQNNRPHKIDGRIVEPIRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREY 444 D A +R I + ++PR + PE ++++ L D E D+R+ Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281 Query: 445 FSTFGNIVSVSVVTDKETGKKRGF 516 FS I SV + +KETG+ +G+ Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGY 304 Score = 32.3 bits (70), Expect = 0.20 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Frame = +1 Query: 289 NNRPHKIDGRIVEPIRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459 N P K + VE V E+ + E KL+V G+ E+++R YF + G Sbjct: 126 NKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCG 185 Query: 460 NIVSVSVVTDKETGKKRG 513 I+ V E G G Sbjct: 186 VIIKVDCKMRPEDGAFSG 203 >At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 382 Score = 53.2 bits (122), Expect = 1e-07 Identities = 30/94 (31%), Positives = 46/94 (48%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +F+ GL + TT +LK +E +GEI + V+ D T R+KGFGF+ + A Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222 Query: 292 NRPHKIDGRIVEPIRAVPREEIKRPEASATVKKL 393 N ++ R V + A P K E V+ + Sbjct: 223 NPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256 Score = 47.2 bits (107), Expect = 7e-06 Identities = 20/51 (39%), Positives = 31/51 (60%) Frame = +1 Query: 367 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + ++ + +FV GL D E+L+ F +G I SVV DK+TG+ +GFG Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFG 207 >At2g21690.1 68415.m02580 RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 117 Score = 53.2 bits (122), Expect = 1e-07 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +1 Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 FV GL QD +E+DL + FS FGN++ ++ D++TGK R FG Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFG 51 Score = 43.6 bits (98), Expect = 8e-05 Identities = 16/55 (29%), Positives = 33/55 (60%) Frame = +1 Query: 121 FIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 F+ GLD T + L + + ++G ++D ++ D T +S+ FGF+T+ + + +A Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 52.8 bits (121), Expect = 1e-07 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 14/168 (8%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 +++ P S +++ +++ L TD+ LK + ++GEI VVMKD + K S+ Sbjct: 101 IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SR 159 Query: 238 GFGFITYSQAH------------MVDEAQNN--RPHKIDGRIVEPIRAVPREEIKRPEAS 375 FGF+ + +A +VDE + + R + R + E+I R + Sbjct: 160 RFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKT 219 Query: 376 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L+V L ++ L E FS FG I S V+ G +G G Sbjct: 220 RKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVG 266 Score = 46.4 bits (105), Expect = 1e-05 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 +F+ LD + L + + +G+++ V +D SKG+GF+ + V A N Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTACNFH 91 Query: 298 PHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 471 +G ++ + I P + + S ++V L + + DL+ F FG I S Sbjct: 92 ----NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITS 147 Query: 472 VSVVTDKETGKKRGFG 519 V+ D E GK R FG Sbjct: 148 AVVMKDGE-GKSRRFG 162 >At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 129 Score = 52.8 bits (121), Expect = 1e-07 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Frame = +1 Query: 58 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234 L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S Sbjct: 28 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 85 Query: 235 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 324 +GFGFI+ + + H + GR++ Sbjct: 86 RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116 >At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonucleoprotein, putative similar to GB:Y09506 from [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269 (1997)) Length = 382 Score = 52.8 bits (121), Expect = 1e-07 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Frame = +1 Query: 58 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234 L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S Sbjct: 58 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 115 Query: 235 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 324 +GFGFI+ + + H + GR++ Sbjct: 116 RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 146 >At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI:1009363; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 156 Score = 52.4 bits (120), Expect = 2e-07 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 + E + LF+ GL RTT L+ + Q+GE+ D V+ D + SKGFGF+ Y+ Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110 Query: 277 DEAQNNRPHK-IDGRIVEPIRAVPREE 354 + K +DG ++ A PRE+ Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQ 137 Score = 46.0 bits (104), Expect = 2e-05 Identities = 22/53 (41%), Positives = 31/53 (58%) Frame = +1 Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 RP+A + LFV+GL + E LR F+ FG + VVTD+ +G +GFG Sbjct: 49 RPQAEPSTN-LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFG 100 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 52.4 bits (120), Expect = 2e-07 Identities = 19/57 (33%), Positives = 37/57 (64%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 + F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63 Score = 47.6 bits (108), Expect = 5e-06 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + FV GL +EDL+ FS FG+++ ++ D+E+G+ RGFG Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFG 50 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 52.4 bits (120), Expect = 2e-07 Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 3/142 (2%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P H ++FIGGL + L++ E+ GEI +V +MKD + SKG+ F+ + + Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171 Query: 280 EA-QNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTF 456 +A + + G+ + R S T +LF+ + ++ E++ R+ Sbjct: 172 KAIEELHSKEFKGKTI------------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 219 Query: 457 G-NIVSVSVVTD-KETGKKRGF 516 G + ++ ++ D T + RGF Sbjct: 220 GPGVENIELIKDPTNTTRNRGF 241 Score = 41.9 bits (94), Expect = 3e-04 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Frame = +1 Query: 70 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249 P S + + L++ + T+ LKE +++ GE+ +V KR FGF Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGF 335 Query: 250 ITYSQ-AHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEAS 375 + Y++ + + ++ ++++G+ +E + A P+ E K +S Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSS 378 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 52.0 bits (119), Expect = 2e-07 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309 Query: 295 -RPHKIDGRIVEPIRAVPR 348 +DGR + A R Sbjct: 310 LNGADLDGRQIRVSEAEAR 328 Score = 50.4 bits (115), Expect = 7e-07 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291 KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 292 NRPHKIDGR 318 ++ +GR Sbjct: 160 FNGYEFEGR 168 Score = 44.4 bits (100), Expect = 5e-05 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLFV L +++ L + F + GN+ V V+ DK TG+ RGFG Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 52.0 bits (119), Expect = 2e-07 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 295 -RPHKIDGRIVEPIRAVPR 348 +DGR + A R Sbjct: 318 LNGADLDGRQIRVSEAEAR 336 Score = 50.4 bits (115), Expect = 7e-07 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 291 KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 292 NRPHKIDGR 318 ++ +GR Sbjct: 160 FNGYEFEGR 168 Score = 44.4 bits (100), Expect = 5e-05 Identities = 19/44 (43%), Positives = 27/44 (61%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLFV L +++ L + F + GN+ V V+ DK TG+ RGFG Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 51.2 bits (117), Expect = 4e-07 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 4/140 (2%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHMVDE 282 + L+IG L ++ + + Q GE V+++ T +S+G+GFI ++S A V + Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119 Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFG 459 N P + A KR + +FV L ++ + L + F + +G Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYG 179 Query: 460 NIVSVSVVTDKETGKKRGFG 519 ++ VV D+ TG+ +G+G Sbjct: 180 SVKGAKVVLDRTTGRSKGYG 199 Score = 48.4 bits (110), Expect = 3e-06 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 15/151 (9%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 258 E P+HT +F+G L TD L + ++ +G + V+ D T RSKG+GF+ + Sbjct: 150 EGPDHT--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207 Query: 259 ----SQAHMVDEAQNNRPHKI------DGRIVEPIRAVPREEIKRPEASATVKKLFVAGL 408 + M + + RP +I + ++P + + +FV GL Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267 Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 ++ +++L+ F FG ++ V + K G Sbjct: 268 DANVTDDELKSIFGQFGELLHVKIPPGKRCG 298 Score = 41.9 bits (94), Expect = 3e-04 Identities = 29/86 (33%), Positives = 45/86 (52%) Frame = +1 Query: 28 NILGLQV**ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 207 N L +Q N + + +GD+ +P +T +F+GGLD TD LK + Q+GE++ V Sbjct: 235 NALPMQPAMYQNTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELLHV-- 289 Query: 208 MKDPKTKRSKGFGFITYSQAHMVDEA 285 K P KR GF+ Y+ + A Sbjct: 290 -KIPPGKRC---GFVQYANKASAEHA 311 Score = 37.9 bits (84), Expect = 0.004 Identities = 16/54 (29%), Positives = 31/54 (57%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + P +++ VK L++ L+Q ++E + F+ G S V+ +K TG+ G+G Sbjct: 51 QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 51.2 bits (117), Expect = 4e-07 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291 ++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++ Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72 Query: 292 NRPHKIDGRIVEPIRAVPR 348 ++ +++ +A P+ Sbjct: 73 MHGRELGNKVISVNKAEPK 91 Score = 42.7 bits (96), Expect = 1e-04 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++FV GL D+ E L F +G I ++ ++TG+ RGFG Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFG 56 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 51.2 bits (117), Expect = 4e-07 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 291 ++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++ Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72 Query: 292 NRPHKIDGRIVEPIRAVPR 348 ++ +++ +A P+ Sbjct: 73 MHGRELGNKVISVNKAEPK 91 Score = 42.7 bits (96), Expect = 1e-04 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++FV GL D+ E L F +G I ++ ++TG+ RGFG Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFG 56 >At3g08000.1 68416.m00977 RNA-binding protein, putative similar to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 143 Score = 50.8 bits (116), Expect = 5e-07 Identities = 20/50 (40%), Positives = 34/50 (68%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 KLFIGGL + + SLK+ + +GE+ +V + D + RS+GFGF+ +++ Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91 Score = 50.4 bits (115), Expect = 7e-07 Identities = 19/44 (43%), Positives = 30/44 (68%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KLF+ GL ++E+ L++ FS+FG + V + DK +G+ RGFG Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFG 85 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 49.6 bits (113), Expect = 1e-06 Identities = 31/144 (21%), Positives = 67/144 (46%) Frame = +1 Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255 E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+ Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65 Query: 256 YSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435 D+ N +K + + ++ + + E KLFV L +++ E ++ Sbjct: 66 CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122 Query: 436 REYFSTFGNIVSVSVVTDKETGKK 507 + FS +G I + ++ + K Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSK 146 Score = 34.7 bits (76), Expect = 0.038 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LF+ + ++ +++L F +FG ++S V DK TG + FG Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 392 Score = 31.1 bits (67), Expect = 0.47 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +1 Query: 337 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 A +EE + KLFV + + + E L F F + V+++ DK T RG Sbjct: 2 AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 49.6 bits (113), Expect = 1e-06 Identities = 31/144 (21%), Positives = 67/144 (46%) Frame = +1 Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255 E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+ Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65 Query: 256 YSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435 D+ N +K + + ++ + + E KLFV L +++ E ++ Sbjct: 66 CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122 Query: 436 REYFSTFGNIVSVSVVTDKETGKK 507 + FS +G I + ++ + K Sbjct: 123 QSLFSKYGTIKDLQILRGAQQTSK 146 Score = 34.7 bits (76), Expect = 0.038 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LF+ + ++ +++L F +FG ++S V DK TG + FG Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFG 393 Score = 31.1 bits (67), Expect = 0.47 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +1 Query: 337 AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 A +EE + KLFV + + + E L F F + V+++ DK T RG Sbjct: 2 AEAKEENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRG 60 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 49.6 bits (113), Expect = 1e-06 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S+ + + +++ +++GG+ + T+ L + Q+GEIVDV +++D T +SKGF F+ Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82 Query: 253 TYSQAHMVDEAQNN 294 Y A +N Sbjct: 83 AYEDQRSTILAVDN 96 Score = 44.8 bits (101), Expect = 4e-05 Identities = 19/42 (45%), Positives = 28/42 (66%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 ++V G+ D+ E DL FS +G IV V+++ DK TGK +GF Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGF 79 >At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type Length = 613 Score = 49.6 bits (113), Expect = 1e-06 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +F+ G + TT +LK +E +GEI + V+ D T R KG+GF+ + EA Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467 Query: 292 NRPHKIDGRIV 324 ++ RIV Sbjct: 468 RPEKRMYNRIV 478 Score = 44.0 bits (99), Expect = 6e-05 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 + +FV G D +E+L+ F ++G I SVV DK+TG+ +G+G Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYG 452 >At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 427 Score = 49.2 bits (112), Expect = 2e-06 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = +1 Query: 61 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 240 N P+ +GD Y + LF+ L+Y +++S +K +E +G I V ++ D T + KG Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180 Query: 241 FGFITYSQAHMVDEAQNNRP-HKIDGRIV 324 + FI Y + A KIDGR V Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRV 209 Score = 35.5 bits (78), Expect = 0.022 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 K LFV+ L + E ++ F ++G I V +VTD+ T K +G+ Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGY 181 >At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Daucus carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 185 Score = 49.2 bits (112), Expect = 2e-06 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 88 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 D ++ + F+GGL + T + S++ + ++GE+ D ++ D +T RSKGF F+T+ Sbjct: 36 DVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95 Query: 268 HMVDEA-QNNRPHKIDGR 318 + A ++DGR Sbjct: 96 DSMRTAIDRMNGQELDGR 113 Score = 39.1 bits (87), Expect = 0.002 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 + FV GL +E+ + F+ FG + ++ D+ETG+ +GF Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGF 87 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 49.2 bits (112), Expect = 2e-06 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 273 + R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118 Query: 274 VDEAQNNRP-HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF- 447 V + NN P ++ A KR ++ +FV L D+ + L E F Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFR 176 Query: 448 STFGNIVSVSVVTDKETGKKRGFG 519 +++ ++ VV D+ TG+ +G+G Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYG 200 Score = 48.8 bits (111), Expect = 2e-06 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 16/164 (9%) Frame = +1 Query: 58 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231 LN SGD ++ P++T +F+G L TD L E F + + V+ D T R Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195 Query: 232 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387 +KG+GF+ +S Q + E + RP +I + R+ + A T Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255 Query: 388 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 +FV GL + ++ L+ FS +G IV V + K G Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299 Score = 43.6 bits (98), Expect = 8e-05 Identities = 26/63 (41%), Positives = 36/63 (57%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 +P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+ Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSEKSCA 309 Query: 277 DEA 285 +EA Sbjct: 310 EEA 312 Score = 34.7 bits (76), Expect = 0.038 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +1 Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +P + ++ L++ L+ ++E L F+ G +VS V+ +K+TG+ G+G Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106 >At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 306 Score = 49.2 bits (112), Expect = 2e-06 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 273 + R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118 Query: 274 VDEAQNNRP-HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF- 447 V + NN P ++ A KR ++ +FV L D+ + L E F Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFR 176 Query: 448 STFGNIVSVSVVTDKETGKKRGFG 519 +++ ++ VV D+ TG+ +G+G Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYG 200 Score = 48.8 bits (111), Expect = 2e-06 Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 16/164 (9%) Frame = +1 Query: 58 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 231 LN SGD ++ P++T +F+G L TD L E F + + V+ D T R Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195 Query: 232 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPIRAVPREEIKRPEASATVK 387 +KG+GF+ +S Q + E + RP +I + R+ + A T Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255 Query: 388 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 +FV GL + ++ L+ FS +G IV V + K G Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299 Score = 40.3 bits (90), Expect = 8e-04 Identities = 24/56 (42%), Positives = 33/56 (58%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 +P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+ Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSE 305 Score = 34.7 bits (76), Expect = 0.038 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +1 Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +P + ++ L++ L+ ++E L F+ G +VS V+ +K+TG+ G+G Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106 >At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris] Length = 293 Score = 49.2 bits (112), Expect = 2e-06 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Frame = +1 Query: 154 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEP 330 + L + ++ +G ++ V V ++P+T S+G G++T + A + ++ GR + Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181 Query: 331 IRAVPREEIKR--PEA-SATVKKL---------FVAGLKQDIEEEDLREYFSTFGNIVSV 474 +V R PE ++T KK+ +V L + + LR +FS FG IVS Sbjct: 182 RYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVST 241 Query: 475 SVVTDKETGKKRGF 516 V+ D++TG+ R F Sbjct: 242 RVLHDRKTGRNRVF 255 Score = 45.2 bits (102), Expect = 3e-05 Identities = 25/90 (27%), Positives = 47/90 (52%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282 E K+++G L + T L+ + ++G IV V+ D KT R++ F F++++ D Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268 Query: 283 AQNNRPHKIDGRIVEPIRAVPREEIKRPEA 372 A + + +GR R + RE I++ E+ Sbjct: 269 ALSFNGTQYEGR-----RIIVREGIEKSES 293 Score = 35.9 bits (79), Expect = 0.017 Identities = 21/90 (23%), Positives = 42/90 (46%) Frame = +1 Query: 250 ITYSQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 429 ++ S+ ++DE + K + + E +K+P +L+V + + + Sbjct: 67 VSSSELSVLDEEKEEEVVKGEAEPNKDSVVSKAEPVKKPRPC----ELYVCNIPRSYDIA 122 Query: 430 DLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L + F FG ++SV V + +TG+ RG G Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSG 152 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 48.8 bits (111), Expect = 2e-06 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Frame = +1 Query: 103 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 282 + + L++G L + ++ L + E+ V V+++ +T +S+G+GF+ + +E Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175 Query: 283 AQNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS- 450 A + +P R A KR + +FV L D+ + L E F+ Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235 Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519 + ++ VV D TG+ +G+G Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYG 258 Score = 42.7 bits (96), Expect = 1e-04 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 23/151 (15%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 +F+G L +D+ L E F ++ + V+ D T RSKG+GF+ + + A Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274 Query: 295 R------PHKIDGRIVEPIRAVPREEIKRPEA----------------SATVKKLFVAGL 408 ++ I P RA + +A + +FV GL Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334 Query: 409 KQDIEEEDLREYFSTFGNIVSVSVVTDKETG 501 D+ EEDL + FS FG +VSV + K G Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVGKGCG 365 Score = 37.1 bits (82), Expect = 0.007 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 +F+GGLD T+ L + + +GE+V V K KG GF+ ++ +EA N Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSV------KIPVGKGCGFVQFANRQSAEEAIGNL 382 Query: 298 PHKIDGR 318 + G+ Sbjct: 383 NGTVIGK 389 >At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 48.4 bits (110), Expect = 3e-06 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70 Query: 289 NNRPHKIDGRIVE 327 + ++DGR+V+ Sbjct: 71 HKAVERLDGRVVD 83 Score = 32.3 bits (70), Expect = 0.20 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 P+ S T L V + +DL F+ +G +V V + D+ TG RGF Sbjct: 10 PDISDTYS-LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGF 59 >At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 303 Score = 48.4 bits (110), Expect = 3e-06 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70 Query: 289 NNRPHKIDGRIVE 327 + ++DGR+V+ Sbjct: 71 HKAVERLDGRVVD 83 Score = 32.3 bits (70), Expect = 0.20 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 364 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 P+ S T L V + +DL F+ +G +V V + D+ TG RGF Sbjct: 10 PDISDTYS-LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGF 59 >At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing protein Length = 809 Score = 47.6 bits (108), Expect = 5e-06 Identities = 18/57 (31%), Positives = 35/57 (61%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++F+G LD ++ LK+ + GE+ +V ++K+P+TK+SKG F+ ++ A Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271 Score = 33.5 bits (73), Expect = 0.088 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 ++FV L + EEDL++ F G + V ++ + +T K +G Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKG 256 >At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing protein Length = 116 Score = 47.6 bits (108), Expect = 5e-06 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294 LF+ G+ + +T+ +L + + Q+G+++ V V+ D R KGF ++T+S ++A Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82 Query: 295 RPHKIDGRIV 324 +DGR+V Sbjct: 83 NAQLVDGRVV 92 Score = 35.5 bits (78), Expect = 0.022 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 LFV G+ EE L + FS +G ++ V V+ DK + +GF Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGF 64 >At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 347 Score = 47.6 bits (108), Expect = 5e-06 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 Query: 292 NRPHKIDGR 318 +I R Sbjct: 164 EPKKRILNR 172 Score = 43.6 bits (98), Expect = 8e-05 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = +1 Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ + T +K+FV GL + E L F +G I +VV DK TGK +GFG Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFG 148 >At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly identical to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); based on cDNA of partial mRNA for UBP1 interacting protein 1a (uba1a) GI:19574235 Length = 343 Score = 47.6 bits (108), Expect = 5e-06 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163 Query: 292 NRPHKIDGR 318 +I R Sbjct: 164 EPKKRILNR 172 Score = 43.6 bits (98), Expect = 8e-05 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = +1 Query: 355 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ + T +K+FV GL + E L F +G I +VV DK TGK +GFG Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFG 148 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 47.2 bits (107), Expect = 7e-06 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 + + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400 Query: 238 GFGFITYSQAHMVDEA 285 G+ F Y + D A Sbjct: 401 GYAFCVYQDLSVTDIA 416 Score = 37.9 bits (84), Expect(2) = 3e-05 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 ++FV GL E +RE +FG + +V D+ETG +G+ Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402 Score = 26.6 bits (56), Expect(2) = 3e-05 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213 L+M P ++ + H R++++GGL + S+ F+ Q V D VV Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278 Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384 + K F F+ + V+EA N +DG I E P++ V R P +AT+ Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 47.2 bits (107), Expect = 7e-06 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 + + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400 Query: 238 GFGFITYSQAHMVDEA 285 G+ F Y + D A Sbjct: 401 GYAFCVYQDLSVTDIA 416 Score = 37.9 bits (84), Expect(2) = 3e-05 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 ++FV GL E +RE +FG + +V D+ETG +G+ Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402 Score = 26.6 bits (56), Expect(2) = 3e-05 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213 L+M P ++ + H R++++GGL + S+ F+ Q V D VV Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278 Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384 + K F F+ + V+EA N +DG I E P++ V R P +AT+ Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 47.2 bits (107), Expect = 7e-06 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 + + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400 Query: 238 GFGFITYSQAHMVDEA 285 G+ F Y + D A Sbjct: 401 GYAFCVYQDLSVTDIA 416 Score = 37.9 bits (84), Expect(2) = 3e-05 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 ++FV GL E +RE +FG + +V D+ETG +G+ Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402 Score = 26.6 bits (56), Expect(2) = 3e-05 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMK 213 L+M P ++ + H R++++GGL + S+ F+ Q V D VV Sbjct: 222 LSMMPIQAMTQ-QATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVV-- 278 Query: 214 DPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384 + K F F+ + V+EA N +DG I E P++ V R P +AT+ Sbjct: 279 NVYINHEKKFAFV---EMRSVEEASN--AMSLDGIIFEGAPVK-VRRPSDYNPSLAATL 331 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 46.8 bits (106), Expect = 9e-06 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 2/143 (1%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 +P R +++G + + T+ L+E + G + +++ K+ +GF+ Y Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSA 109 Query: 277 DEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450 A + ++GR + +PI+ + E +++ +FV L ++ + L + FS Sbjct: 110 ALAILS----LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFS 165 Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519 F + V+ D++TG+ RGFG Sbjct: 166 VFSSCSDARVMWDQKTGRSRGFG 188 Score = 42.7 bits (96), Expect = 1e-04 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 +F+G L TD++L + + + D VM D KT RS+GFGF+++ A N Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203 Score = 31.1 bits (67), Expect = 0.47 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%) Frame = +1 Query: 94 EEPEHTRK---LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS- 261 E PE+ + +++G L T L ++ G V+++ + +R KGFGF+ Y+ Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNT 311 Query: 262 --QAHMVDEAQNNRPHKIDGRI 321 +A + + N +P+ + +I Sbjct: 312 HPEAALAIQMGNTQPYLFNRQI 333 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 46.4 bits (105), Expect = 1e-05 Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY----SQAHMV 276 T +LF+ L Y T+ L E + +G+I +V ++ D +TKRS+G +I Y A + Sbjct: 260 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319 Query: 277 DEAQNNRPHKIDGRIVEPIRAVPRE-EIKRPEASATVKKLFVAGLKQDIEEE 429 +E N+ GR++ + A RE K+ ++ + K F KQ EE+ Sbjct: 320 EELDNS---SFQGRLLHILPAKHRETSDKQVNDTSNLPKTF----KQKREEQ 364 Score = 46.0 bits (104), Expect = 2e-05 Identities = 22/42 (52%), Positives = 27/42 (64%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 +LFV L EE+L E+FSTFG I V +V DKET + RG Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRG 303 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 46.4 bits (105), Expect = 1e-05 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = +1 Query: 79 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 SGD + LF+G L + TT+ +L+E ++G I ++ +++ T S+G+GF+ Y Sbjct: 53 SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112 Query: 259 SQAHMVDEAQNNRPHK-IDGR 318 + A + H IDGR Sbjct: 113 ETEKEMLRAYEDAHHSLIDGR 133 Score = 34.3 bits (75), Expect = 0.050 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LFV L E+ LRE S +G I ++ +V TG RG+G Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 45.6 bits (103), Expect = 2e-05 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294 L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541 Query: 295 RPHKIDGR 318 ++ +GR Sbjct: 542 NGYRFEGR 549 Score = 39.1 bits (87), Expect = 0.002 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 K P L++ L +E++ L FS+FG IV V+ D+ TG +G+G Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 45.6 bits (103), Expect = 2e-05 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 294 L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541 Query: 295 RPHKIDGR 318 ++ +GR Sbjct: 542 NGYRFEGR 549 Score = 39.1 bits (87), Expect = 0.002 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 K P L++ L +E++ L FS+FG IV V+ D+ TG +G+G Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 45.6 bits (103), Expect = 2e-05 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 28/164 (17%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 285 + LF+ L Y T ++ +F+++ GE+V V ++ + K K G GF+ ++ + +EA Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGK-LVGCGFVEFASVNEAEEALQ 185 Query: 286 -------QNNR-------------------PHKIDGRIVEPIRAVPREEIKRPEASATVK 387 NN+ HK+ + + + P EE +RP S + Sbjct: 186 KKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVE-E 244 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LFVA L + D+ ++F+ G +VS+ ++ + E GK G+G Sbjct: 245 VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYG 287 Score = 37.1 bits (82), Expect = 0.007 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 26/169 (15%) Frame = +1 Query: 85 DDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 +D P + LF+ L +T S + +F+ GE+V + +M + + K G+GF+ ++ Sbjct: 234 EDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH-VGYGFVEFA 292 Query: 262 QAHMVDEAQNNR------PHK--IDGRIVEPI------------RAVPREEIKRP----E 369 A +A N+ HK ID P ++P +E + P E Sbjct: 293 SADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVE 352 Query: 370 ASATVKK-LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 A KK LFVA L + E + +F G +V V ++ + TGK G Sbjct: 353 AVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILN-HTGKHVG 400 >At1g71800.1 68414.m08298 cleavage stimulation factor, putative similar to cleavage stimulation factor 64 kilodalton subunit GB:AAD47839 GI:5713194 from [Drosophila melanogaster], SP|P33240 Cleavage stimulation factor, 64 kDa subunit {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 461 Score = 45.6 bits (103), Expect = 2e-05 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = +1 Query: 370 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +S+ + +FV + D EE LRE G +VS +VTD+ETGK +G+G Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYG 53 Score = 44.0 bits (99), Expect = 6e-05 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +F+G + Y T+ L+E + G +V ++ D +T + KG+GF Y A+ Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68 Query: 292 N-RPHKIDGR 318 N + ++I+GR Sbjct: 69 NLQSYEINGR 78 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 45.6 bits (103), Expect = 2e-05 Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Frame = +1 Query: 64 MKPSESGD--DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 M+P SG+ +P R ++ G + + T+ L+E + G I +++ K+ Sbjct: 45 MEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--- 101 Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLK 411 +GF+ Y A ++GR + +P++ + E +++ +FV L Sbjct: 102 -YGFVHYFDRRCASMAIMT----LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156 Query: 412 QDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 ++ + L + FS F + V+ D++TG+ RGFG Sbjct: 157 PEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFG 192 Score = 42.7 bits (96), Expect = 1e-04 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 +F+G L TD++L + + + D VM D KT RS+GFGF+++ A N Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207 Score = 27.9 bits (59), Expect = 4.4 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 79 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S +D E P+ T +++G L T L + G V+++ + +R KGFGF+ Sbjct: 257 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311 Query: 253 TYS 261 Y+ Sbjct: 312 RYN 314 >At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 310 Score = 45.2 bits (102), Expect = 3e-05 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 + +++G L + ++ L + E IV V V+++ S+G+GF+ + + D+ Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160 Query: 286 QNNRPHKIDGRIVEPIR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS-T 453 +P R A KR E + +FV L D+ + L E FS Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220 Query: 454 FGNIVSVSVVTDKETGKKRGFG 519 + ++ + VV D TG+ +G+G Sbjct: 221 YPSVKAAKVVLDANTGRSKGYG 242 Score = 34.7 bits (76), Expect = 0.038 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 +F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246 >At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial (RPS19) Length = 212 Score = 44.8 bits (101), Expect = 4e-05 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 KL++ GL +E L++ FS+F + V+T+K TG+ RG+G Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYG 75 Score = 42.7 bits (96), Expect = 1e-04 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 KL+IGGL T + SLK+ + + + + VM + T RS+G+GF+ + Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 44.8 bits (101), Expect = 4e-05 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 +++GGL Y T+ +++ + +G ++ V ++ D ++ R K +GF+T+S D+A + Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67 Query: 298 PHK-IDGRIV 324 K I GR V Sbjct: 68 DGKSIGGRAV 77 >At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 140 Score = 44.8 bits (101), Expect = 4e-05 Identities = 20/60 (33%), Positives = 35/60 (58%) Frame = +1 Query: 82 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 G + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+T S Sbjct: 63 GSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120 >At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing protein heterogeneous nuclear ribonucleoprotein R, Homo sapiens, PIR:T02673; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 471 Score = 44.8 bits (101), Expect = 4e-05 Identities = 18/62 (29%), Positives = 34/62 (54%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P H ++++GG+ T+ LK F GE+ +V +M++ + KG+ F+T+ + Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147 Query: 280 EA 285 EA Sbjct: 148 EA 149 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 44.4 bits (100), Expect = 5e-05 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 K+++G L T L+ + + G++V V + P T +S GFGF+T+S V+ A Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234 >At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit GB:CAA77136 from [Nicotiana plumbaginifolia] Length = 589 Score = 44.4 bits (100), Expect = 5e-05 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++F+GGL Y T+ ++E E +G + ++KD +T SKG+ F Y + D A Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432 Score = 36.7 bits (81), Expect(2) = 1e-04 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 ++FV GL E +RE +FG + ++V D+ETG +G+ Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGY 418 Score = 25.8 bits (54), Expect(2) = 1e-04 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 10/103 (9%) Frame = +1 Query: 106 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIV--------DVVVMKDPKTKRSKGFGFITYS 261 H R++++GGL + S+ F+ Q + D VV + K F F+ Sbjct: 253 HARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVV--NVYINHEKKFAFV--- 307 Query: 262 QAHMVDEAQNNRPHKIDGRIVE--PIRAVPREEIKRPEASATV 384 + V+EA N +DG I+E P++ V R P +AT+ Sbjct: 308 EMRSVEEASN--AMALDGIILEGVPVK-VRRPTDYNPSLAATL 347 >At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, putative Length = 506 Score = 44.4 bits (100), Expect = 5e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = +1 Query: 319 IVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 498 ++E I +P E+K P+ LFV L E+EDL FS FG +VS V+ D +T Sbjct: 226 VLESIGDIPEAEVKPPD-----NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKT 280 Query: 499 G 501 G Sbjct: 281 G 281 >At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing protein low similarity to heterogeneous nuclear ribonucleoprotein G [Mus musculus] GI:5579009; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 152 Score = 44.0 bits (99), Expect = 6e-05 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEA 285 K+ + L + T++ LK + +GEI +V ++KD KRSKG+ FI ++ A + E Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100 Query: 286 QNNRPHKIDGRIV 324 + R + +GR++ Sbjct: 101 MDRRMY--NGRMI 111 >At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700 Length = 141 Score = 43.2 bits (97), Expect = 1e-04 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+ Sbjct: 61 SRGRSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118 Query: 253 TYS 261 T S Sbjct: 119 TMS 121 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 43.2 bits (97), Expect = 1e-04 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 6/155 (3%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S + + EE +L + + +T ++ +E++G ++D+ M K +R++G FI Sbjct: 81 SSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIE-MSMHKKERNRGLVFI 139 Query: 253 TYSQAHMVDEAQNNRPH-KIDGRI--VEPIRAVPREEIKRPEASATVK--KLFVAGLKQD 417 + A + + +GR V+ + ++ E + V LFVA L + Sbjct: 140 EMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFE 199 Query: 418 IEEEDLREYFST-FGNIVSVSVVTDKETGKKRGFG 519 + L+E+F GN+VS V+ + + G+G Sbjct: 200 ARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 234 Score = 37.1 bits (82), Expect = 0.007 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 P T LF+ L + LKEF++ G +V V+ +RS G+GF+++ Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 244 Query: 277 DEA 285 + A Sbjct: 245 EAA 247 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 43.2 bits (97), Expect = 1e-04 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L++ LD+ T+S + + +G++ V V+KD T++S+G F+ Y +A + Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118 Query: 298 PHKI-DGR 318 KI +GR Sbjct: 119 DAKILNGR 126 Score = 36.3 bits (80), Expect = 0.012 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 L+V+ L + D+ FSTFG + V+V+ D+ T + RG Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRG 99 >At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 173 Score = 42.3 bits (95), Expect = 2e-04 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++IG +D R +D L + Q G ++D+ + +D +T + KGF F Y + D A Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64 Score = 27.1 bits (57), Expect = 7.7 Identities = 9/42 (21%), Positives = 22/42 (52%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 +++ + + + + L + G ++ + + DKET K +GF Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGF 50 >At5g65260.1 68418.m08209 polyadenylate-binding protein family protein / PABP family protein low similarity to poly(A)-binding protein II [Drosophila melanogaster] GI:6007612; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 220 Score = 41.9 bits (94), Expect = 3e-04 Identities = 19/75 (25%), Positives = 38/75 (50%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 +E R +F+G +DY T +++ ++ G + V ++ D K + KGF ++ + + Sbjct: 86 KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEA 144 Query: 274 VDEAQNNRPHKIDGR 318 V EA ++ GR Sbjct: 145 VQEALQLNESELHGR 159 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 41.9 bits (94), Expect = 3e-04 Identities = 31/87 (35%), Positives = 45/87 (51%) Frame = +1 Query: 130 GLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 309 GL TTD SL++ + + ++ KD +T+R KGFGFIT+ D+AQ + Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESE---DDAQ-KALKAL 127 Query: 310 DGRIVEPIRAVPREEIKRPEASATVKK 390 +G+IV R + E K EA T K Sbjct: 128 NGKIVNG-RLIFVETAKEVEAPTTSLK 153 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 41.9 bits (94), Expect = 3e-04 Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 +P R +++G + + T+ L+E + G + +++ K +GF+ Y Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIR----KEKSSYGFVHYFDRRSA 104 Query: 277 DEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450 A + ++GR + +PI+ + E +++ +FV L ++ + L FS Sbjct: 105 GLAILS----LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFS 160 Query: 451 TFGNIVSVSVVTDKETGKKRGFG 519 + V+ D++TG+ RGFG Sbjct: 161 VYPTCSDARVMWDQKTGRSRGFG 183 Score = 39.5 bits (88), Expect = 0.001 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +1 Query: 79 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 SG + H +F+G L TD+ L + + D VM D KT RS+GFGF+++ Sbjct: 129 SGQREDTSSHFN-IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/65 (24%), Positives = 30/65 (46%) Frame = +1 Query: 67 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 246 K + +G+ E +++G L + L + G V+++ + +R KGFG Sbjct: 245 KDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFG 300 Query: 247 FITYS 261 F+ YS Sbjct: 301 FVRYS 305 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 41.5 bits (93), Expect = 3e-04 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 285 R +F+G +Y T S L+ ++++G VD V MK G+ F+ + ++A Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGR-VDRVDMK-------SGYAFVYFEDERDAEDAIR 53 Query: 286 -QNNRPHKIDGRIV-----EPIRAVPREEIKRPEASATVKKLFVAGLKQ-DIEEEDLREY 444 +N P + R + + R PR + K P K LFV +E D+ ++ Sbjct: 54 KLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKH 113 Query: 445 FSTFGNIVSVSV 480 F +G + +V + Sbjct: 114 FEPYGKVTNVRI 125 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 41.5 bits (93), Expect = 3e-04 Identities = 19/41 (46%), Positives = 23/41 (56%) Frame = +1 Query: 397 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 V L +D E DL E F FG + V V D++TG RGFG Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFG 257 Score = 37.1 bits (82), Expect = 0.007 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Frame = +1 Query: 73 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S G D + + L T + L E + +G + V V D KT S+GFGF+ Sbjct: 200 SAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259 Query: 253 TYSQAHMVDEAQNN-RPHKIDGRIVEPIRAVPR 348 + A N + D I+ A PR Sbjct: 260 NFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292 >At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28) nearly identical to SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana] GI:9843655; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 236 Score = 40.7 bits (91), Expect = 6e-04 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Frame = +1 Query: 133 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-I 309 LD R D L++ +E++G + D+ + ++ T +GFGF+ Y A EA HK I Sbjct: 56 LDARPND--LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 113 Query: 310 DGRIVEPIRAVPREEIKRPEASAT 381 GR + + A E K P+ T Sbjct: 114 GGREIAIVFA--EENRKTPQEMRT 135 Score = 33.5 bits (73), Expect = 0.088 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +1 Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 R S+ L + L D DLR+ F FG + + + + TG+ RGFG Sbjct: 39 RDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 40.7 bits (91), Expect = 6e-04 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +1 Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 R + A ++ KL+VA + + E D+R+ F +GN+ + + DK TG++ + Sbjct: 97 RSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAY 153 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 40.7 bits (91), Expect = 6e-04 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L++GGL +S L + +G+I DV D ++ + FGF+T+ + A +N Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74 Query: 298 P-HKIDGRIVEPIRAVPREEIKRPE 369 ++ GR++ A+P E+IK E Sbjct: 75 DGAELYGRVLTVNYALP-EKIKGGE 98 Score = 33.1 bits (72), Expect = 0.12 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L+V GL ++ E L F FG+I V D+ K R FG Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFG 57 >At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 126 Score = 40.3 bits (90), Expect = 8e-04 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +1 Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 H ++ P+R + + + EAS+ ++ LFV G + E L++ FS FG + Sbjct: 25 HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 84 Query: 466 VSVSVVTDKETGKKRGFG 519 +V ++ ++ T + G+G Sbjct: 85 TNVKIIANERTRQSLGYG 102 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 40.3 bits (90), Expect = 8e-04 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +1 Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 H ++ P+R + + + EAS+ ++ LFV G + E L++ FS FG + Sbjct: 44 HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 103 Query: 466 VSVSVVTDKETGKKRGFG 519 +V ++ ++ T + G+G Sbjct: 104 TNVKIIANERTRQSLGYG 121 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 40.3 bits (90), Expect = 8e-04 Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 8/160 (5%) Frame = +1 Query: 64 MKPSESGD--DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 M+P SG+ +P R ++ G + + T+ L+E + G I +++ K+ Sbjct: 45 MEPLPSGNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--- 101 Query: 238 GFGFITYSQAHMVDEAQNNRPHKIDGRIV--EPIRAVPREEIKRPEASATVKKLFVAGLK 411 +GF+ Y A ++GR + +P++ + E +++ +FV L Sbjct: 102 -YGFVHYFDRRCASMAIMT----LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156 Query: 412 QDIEEEDLREYFSTFGNIVS----VSVVTDKETGKKRGFG 519 ++ + L + FS F + S V+ D++TG+ RGFG Sbjct: 157 PEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFG 196 Score = 35.9 bits (79), Expect = 0.017 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIV----DVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 +F+G L TD++L + + + D VM D KT RS+GFGF+++ A Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209 Query: 286 QN 291 N Sbjct: 210 IN 211 Score = 27.9 bits (59), Expect = 4.4 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 79 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 252 S +D E P+ T +++G L T L + G V+++ + +R KGFGF+ Sbjct: 261 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315 Query: 253 TYS 261 Y+ Sbjct: 316 RYN 318 >At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat Length = 952 Score = 39.9 bits (89), Expect = 0.001 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +1 Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK-DPKTKRSKGFGFI 252 E+ + +E K+F+G L +EF+ Q+G I +V+++K + +++ GFGFI Sbjct: 153 ETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFI 212 Query: 253 TYSQAHMVDEAQNNRPHKIDGRIV 324 Y+ +A + GRI+ Sbjct: 213 IYAAEKSAMKAVEFDGVEFHGRIL 236 Score = 34.3 bits (75), Expect = 0.050 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +1 Query: 343 PREEIKRPEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT-DKETGKKRGF 516 P EE + P+ + K+FV L I++ + E+F FG I +V ++ E K GF Sbjct: 150 PEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGF 209 Query: 517 G 519 G Sbjct: 210 G 210 >At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing protein low similarity to tumor-rejection antigen SART3 [Mus musculus] GI:7637845; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 817 Score = 39.9 bits (89), Expect = 0.001 Identities = 22/78 (28%), Positives = 42/78 (53%) Frame = +1 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459 +A+N + D E + + + ++ R E +A F++ L +EED+R++F G Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675 Query: 460 NIVSVSVVTDKETGKKRG 513 + S+ ++ K+TGK RG Sbjct: 676 GVDSIRILHHKDTGKPRG 693 >At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing protein low similarity to tumor-rejection antigen SART3 [Mus musculus] GI:7637845; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 816 Score = 39.9 bits (89), Expect = 0.001 Identities = 22/78 (28%), Positives = 42/78 (53%) Frame = +1 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 459 +A+N + D E + + + ++ R E +A F++ L +EED+R++F G Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675 Query: 460 NIVSVSVVTDKETGKKRG 513 + S+ ++ K+TGK RG Sbjct: 676 GVDSIRILHHKDTGKPRG 693 >At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 222 Score = 39.5 bits (88), Expect = 0.001 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 288 L+IG + + ++ ++ F+ Q+G + V V ++ KT +SK FGFI + A + A Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121 Query: 289 NN---RPHKIDGRIVEPIRAVP 345 N+ H + ++EP P Sbjct: 122 NDYLLMEHMLKVHVIEPENVKP 143 Score = 36.3 bits (80), Expect = 0.012 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = +1 Query: 328 PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 507 P R P + P L++ + E ++ +FS FG + V V +K+TGK Sbjct: 44 PARKAP---VTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKS 100 Query: 508 RGFG 519 + FG Sbjct: 101 KHFG 104 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 39.5 bits (88), Expect = 0.001 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 L V L+ D +EDLR+ F FG + + + D TG RGFG Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFG 80 Score = 33.5 bits (73), Expect = 0.088 Identities = 17/69 (24%), Positives = 35/69 (50%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L + L + L++ +EQ+G + D+ + +D T +GFGF+ + +A+ Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94 Query: 298 PHKIDGRIV 324 H +DG ++ Sbjct: 95 -HHMDGYLL 102 >At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a) almost identical to SC35-like splicing factor SCL30a GI:9843661 from [Arabidopsis thaliana]; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 39.1 bits (87), Expect = 0.002 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = +1 Query: 343 PREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 PR S L V L+ D +EDLR F FG + + + D TG RGFG Sbjct: 23 PRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFG 81 Score = 34.7 bits (76), Expect = 0.038 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L + L + L+ +EQ+G + D+ + +D T +GFGFI + EA+ Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95 Query: 298 PHKIDGRIV 324 H++DG ++ Sbjct: 96 -HQMDGYLL 103 >At1g45100.1 68414.m05170 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis sativus] GI:7528270; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 497 Score = 39.1 bits (87), Expect = 0.002 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = +1 Query: 55 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234 IL MK ES EE T+ LF+ L S + F++ GE+V V ++ + + K + Sbjct: 228 ILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHA 287 Query: 235 KGFGFITYSQAHMVDEA 285 G+GF+ ++ A+ ++A Sbjct: 288 -GWGFVEFASANEAEKA 303 >At5g10350.2 68418.m01201 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 38.7 bits (86), Expect = 0.002 Identities = 18/75 (24%), Positives = 37/75 (49%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 +E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + + Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141 Query: 274 VDEAQNNRPHKIDGR 318 V EA ++ GR Sbjct: 142 VQEALQLNESELHGR 156 >At5g10350.1 68418.m01200 polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 217 Score = 38.7 bits (86), Expect = 0.002 Identities = 18/75 (24%), Positives = 37/75 (49%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 +E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + + Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141 Query: 274 VDEAQNNRPHKIDGR 318 V EA ++ GR Sbjct: 142 VQEALQLNESELHGR 156 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 38.7 bits (86), Expect = 0.002 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L + L ++ LKE + +GE++ V + D +G G++ + ++AQ Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159 Query: 298 P-HKIDGRIVEPIRAV-PREEIKRP 366 +IDG++V+ + PR+++ P Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 38.7 bits (86), Expect = 0.002 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 L + L ++ LKE + +GE++ V + D +G G++ + ++AQ Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159 Query: 298 P-HKIDGRIVEPIRAV-PREEIKRP 366 +IDG++V+ + PR+++ P Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184 >At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 674 Score = 38.3 bits (85), Expect = 0.003 Identities = 14/63 (22%), Positives = 32/63 (50%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 276 E +R +F+ + + T SL + ++GE++ ++ DP T + G +I +++ Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570 Query: 277 DEA 285 + A Sbjct: 571 ENA 573 Score = 37.1 bits (82), Expect = 0.007 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = +1 Query: 361 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 RP A+ + +FVA + ++ L +F+ FG ++ +VTD TG+ G Sbjct: 508 RPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSG 558 >At5g51120.1 68418.m06339 polyadenylate-binding protein, putative / PABP, putative contains similarity to poly(A)-binding protein II [Mus musculus] GI:2351846; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 227 Score = 37.9 bits (84), Expect = 0.004 Identities = 16/78 (20%), Positives = 40/78 (51%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 +E +R +++G +DY T +++ ++ G + V ++ D K + KGF ++ + + Sbjct: 97 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEA 155 Query: 274 VDEAQNNRPHKIDGRIVE 327 V + ++ GR ++ Sbjct: 156 VQNSLILNESELHGRQIK 173 >At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 262 Score = 37.9 bits (84), Expect = 0.004 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 160 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPIR 336 L+E +E++G + DV + +D + + +GF F+ + A+ EAQ + + GR + + Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV- 121 Query: 337 AVPREEIKRPE 369 V E KRPE Sbjct: 122 -VASESRKRPE 131 Score = 32.7 bits (71), Expect = 0.15 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 L V + D E+LRE F FG + V + D +G+ RGF Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGF 90 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 37.5 bits (83), Expect = 0.005 Identities = 20/85 (23%), Positives = 42/85 (49%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P L+I LD + ++ L + +G+++ V+ KD + + S+GF FI + A Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGE-SRGFAFIEFESADSAG 71 Query: 280 EAQNNRPHKIDGRIVEPIRAVPREE 354 A + ++ G+ + ++ P+ E Sbjct: 72 RAMLHMDGRLIGQKILCVQRTPKVE 96 >At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing protein low similarity to poly(A) binding protein II from [Xenopus laevis] GI:11527140, [Mus musculus] GI:2351846, [Bos taurus] GI:1051125; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 537 Score = 37.5 bits (83), Expect = 0.005 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +1 Query: 67 KPS-ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRS 234 KPS +SG+ E+ +R + + + Y ++ F+ + G + +V+V+ DP T+ Sbjct: 426 KPSPQSGESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHP 485 Query: 235 KGFGFITYSQAHMVDEA 285 KG F+T++ V +A Sbjct: 486 KGTAFVTFATKESVGKA 502 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 37.5 bits (83), Expect = 0.005 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LF+ + ++ E+++L F FG ++S V DK TG + FG Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383 Score = 33.1 bits (72), Expect = 0.12 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 LFI + D L ++ +G+++ V D T SK FGFI+Y A N Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 37.5 bits (83), Expect = 0.005 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +1 Query: 391 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 LF+ + ++ E+++L F FG ++S V DK TG + FG Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 374 Score = 33.1 bits (72), Expect = 0.12 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 LFI + D L ++ +G+++ V D T SK FGFI+Y A N Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389 >At5g44200.1 68418.m05408 nuclear cap-binding protein, putative similar to SP|P52298 20 kDa nuclear cap binding protein (CBP20) (NCBP interacting protein 1) {Homo sapiens}; non-consensus AT donor splice site at exon 4, AC acceptor splice site at exon 5; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 257 Score = 37.1 bits (82), Expect = 0.007 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 285 ++IG + + TT+ L E + + GEI +++ D TK GF F+ + ++A Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91 >At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI:1546894; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 245 Score = 37.1 bits (82), Expect = 0.007 Identities = 16/55 (29%), Positives = 31/55 (56%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 E PE+ +LF G L D L + + ++ V++D +T ++KG+GF+++ Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185 Score = 34.3 bits (75), Expect = 0.050 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 519 +LF L ++ ++ L + F+ F V+ DK TGK +G+G Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYG 181 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 36.3 bits (80), Expect = 0.012 Identities = 19/80 (23%), Positives = 42/80 (52%) Frame = +1 Query: 277 DEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTF 456 +E ++R ++ R E + + R P+ S + V+G+ ++ +EED+ F F Sbjct: 62 EEKDSDRQRRLSSRDFESLGSDGRPG---PQRSVEGWIILVSGVHEETQEEDITNAFGDF 118 Query: 457 GNIVSVSVVTDKETGKKRGF 516 G I ++++ D+ +G +G+ Sbjct: 119 GEIKNLNLNLDRRSGYVKGY 138 >At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing protein Mei2-like protein - Arabidopsis thaliana, EMBL:D86122 Length = 907 Score = 35.9 bits (79), Expect = 0.017 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 +R LF+ +D D L ++Q+G++ + +++GF ++Y +A Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRAL-----HTAGKNRGFIMVSYYDIRAAQKAA 264 Query: 289 NN-RPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 + GR ++ ++P+E P+ +++ L+V L I E+L FS++G I Sbjct: 265 RALHGRLLRGRKLDIRYSIPKE---NPKENSSEGALWVNNLDSSISNEELHGIFSSYGEI 321 Query: 466 VSV 474 V Sbjct: 322 REV 324 >At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 35.9 bits (79), Expect = 0.017 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Frame = +1 Query: 103 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 270 EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218 Query: 271 MVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450 M + N+P + R ++ ++P++ E L V L I +DL F Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274 Query: 451 TFGNIVSVSVVTDKETGK 504 G I + K K Sbjct: 275 AHGEIKEIRETPHKRHHK 292 >At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana] Length = 800 Score = 35.9 bits (79), Expect = 0.017 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 4/138 (2%) Frame = +1 Query: 103 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 270 EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218 Query: 271 MVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 450 M + N+P + R ++ ++P++ E L V L I +DL F Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274 Query: 451 TFGNIVSVSVVTDKETGK 504 G I + K K Sbjct: 275 AHGEIKEIRETPHKRHHK 292 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 35.5 bits (78), Expect = 0.022 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +1 Query: 67 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 246 K ++ DD+E R LFI L + T +K+ + +GE+ + ++ TKR +G Sbjct: 551 KETQDNDDFE-----RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTA 605 Query: 247 FITYSQA 267 F+ + A Sbjct: 606 FVKFKTA 612 Score = 35.1 bits (77), Expect = 0.029 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 + LF+ L D+ +E++++ F+ FG + S+S+V K T + G Sbjct: 561 RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEG 603 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 35.1 bits (77), Expect = 0.029 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+ Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 135 Score = 28.7 bits (61), Expect = 2.5 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 T KL+++ L + ED++E F+ G + +V D+ +G+ +G Sbjct: 84 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 127 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 35.1 bits (77), Expect = 0.029 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+ Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 71 Score = 28.7 bits (61), Expect = 2.5 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 T KL+++ L + ED++E F+ G + +V D+ +G+ +G Sbjct: 20 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 63 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 35.1 bits (77), Expect = 0.029 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+ Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 137 Score = 28.7 bits (61), Expect = 2.5 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 T KL+++ L + ED++E F+ G + +V D+ +G+ +G Sbjct: 86 TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKG 129 >At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch domain-containing protein / RNA recognition motif (RRM)-containing protein KIAA0122 gene , Homo sapiens, EMBL:HSDKG02; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF01585: G-patch domain, weak hit to PF00641: Zn-finger in Ran binding protein and others Length = 1105 Score = 35.1 bits (77), Expect = 0.029 Identities = 21/53 (39%), Positives = 26/53 (49%) Frame = +1 Query: 358 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 KR + L V GL +D +EE LR FS I + +V DK T RGF Sbjct: 449 KRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGF 501 Score = 33.5 bits (73), Expect = 0.088 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 124 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 258 + GL ++T+ L + +WG + V V+++ + S+GF FI + Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346 Score = 33.1 bits (72), Expect = 0.12 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 + + S +G E T L + GLD + L+ + + I D+ +++D T S+ Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499 Query: 238 GFGFITY---SQAHMVDEAQNNRPHKIDGRIV 324 GF F+ + A EA N + +G+I+ Sbjct: 500 GFAFVHFYSVEDATKALEATNRTALERNGKIL 531 Score = 30.3 bits (65), Expect = 0.82 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +1 Query: 373 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 SATV V GL EEDL + + +G + V V+ ++ +G RGF Sbjct: 297 SATV---VVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGF 341 >At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1056 Score = 34.3 bits (75), Expect = 0.050 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +1 Query: 58 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 237 L+MKP + D + + L++G L TT+S L E + ++G+I + V S+ Sbjct: 3 LSMKPFRADDSGFQ---SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYS------SR 53 Query: 238 GFGFITY 258 GF FI Y Sbjct: 54 GFAFIYY 60 Score = 31.9 bits (69), Expect = 0.27 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +1 Query: 385 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKET 498 K L+V G+ ++ ++DL E FS FG I + +++T Sbjct: 250 KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT 287 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 33.5 bits (73), Expect = 0.088 Identities = 18/70 (25%), Positives = 27/70 (38%) Frame = +1 Query: 82 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 G D + + L T L E + +G + V D KT S+GFGF+++ Sbjct: 164 GSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFV 223 Query: 262 QAHMVDEAQN 291 A N Sbjct: 224 SREDAQRAIN 233 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 32.3 bits (70), Expect = 0.20 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 264 KL+I LDY ++ +KE + + G++ + D ++ RSKG + +S+ Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSR 157 Score = 30.3 bits (65), Expect = 0.82 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 379 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRG 513 T KL+++ L + ED++E FS G++ + D+ +G+ +G Sbjct: 106 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKG 149 >At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing protein Length = 573 Score = 32.3 bits (70), Expect = 0.20 Identities = 15/63 (23%), Positives = 33/63 (52%) Frame = +1 Query: 55 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 234 ++N P++S + LF+G L + TTD+ ++ Q+G + ++ + + +S Sbjct: 186 MMNKSPTQS---FVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS 242 Query: 235 KGF 243 KG+ Sbjct: 243 KGY 245 >At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing protein similar to SP|P42731 Polyadenylate-binding protein 2 (Poly(A) binding protein 2) (PABP 2) {Arabidopsis thaliana}; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 423 Score = 31.5 bits (68), Expect = 0.36 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +1 Query: 340 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKE 495 +PR+E + P A + LFVA L + D+ + G +VSV ++ + E Sbjct: 112 LPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHE 163 >At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing protein Length = 830 Score = 31.5 bits (68), Expect = 0.36 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Frame = +1 Query: 88 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 258 ++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 230 Query: 259 -SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435 AH A N + R ++ ++P+E E L + + + ++L Sbjct: 231 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 286 Query: 436 REYFSTFGNI 465 + F +G I Sbjct: 287 LQLFGAYGEI 296 Score = 28.7 bits (61), Expect = 2.5 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +1 Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474 R ++ P + LFV + +E+ +L F FG I S+ Sbjct: 172 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 214 >At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing protein Length = 843 Score = 31.5 bits (68), Expect = 0.36 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Frame = +1 Query: 88 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 258 ++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y Sbjct: 189 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 243 Query: 259 -SQAHMVDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 435 AH A N + R ++ ++P+E E L + + + ++L Sbjct: 244 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 299 Query: 436 REYFSTFGNI 465 + F +G I Sbjct: 300 LQLFGAYGEI 309 Score = 28.7 bits (61), Expect = 2.5 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +1 Query: 346 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 474 R ++ P + LFV + +E+ +L F FG I S+ Sbjct: 185 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 227 >At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative similar to spliceosomal protein [Solanum tuberosum] GI:169589 Length = 232 Score = 31.5 bits (68), Expect = 0.36 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKE----FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----A 267 + ++I L+ R LK + Q+G I+DVV +K PK +G ++T+S+ Sbjct: 10 QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAG 66 Query: 268 HMVDEAQN 291 H V + QN Sbjct: 67 HAVRQMQN 74 >At1g32790.1 68414.m04042 RNA-binding protein, putative similar to RNA-binding protein GB:CAB40027 GI:4539439 from [Arabidopsis thaliana] Length = 358 Score = 31.5 bits (68), Expect = 0.36 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +++ LD + T+ L + G++VD + DP + F FI ++ A N Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR--FAFIEFTDEEGAMTALN 230 Query: 292 NR-------PHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438 P K+ + P+ +PR E +R + T+ + + + + + D++ Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTI---YCTNIDKKVTQSDVK 287 Query: 439 EYFSTF-GNIVSVSVVTDKETGKKRGF 516 +F +F G + + ++ D + + F Sbjct: 288 IFFESFCGEVYRLRLLGDYQHSTRIAF 314 >At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}, RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 481 Score = 31.5 bits (68), Expect = 0.36 Identities = 19/78 (24%), Positives = 38/78 (48%) Frame = +1 Query: 76 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 255 ES DD E + L++GGL+ R + +++ + GEI + ++ D K F+T Sbjct: 220 ESPDD----ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVT 269 Query: 256 YSQAHMVDEAQNNRPHKI 309 Y+ ++A +++ Sbjct: 270 YTSREGAEKAAQELSNRL 287 >At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing protein Mei2-like protein, Arabidopsis thaliana, EMBL:D86122 Length = 915 Score = 31.1 bits (67), Expect = 0.47 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 +R L +G + D LK +EQ+G+I + +++GF ++Y A Sbjct: 216 SRTLLVGNISSNVEDYELKVLFEQFGDIQAL-----HTACKNRGFIMVSYCDIRAAQNAA 270 Query: 289 NNRPHK-IDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 +K + G ++ ++ +E + + S L V L I ++L ++G + Sbjct: 271 RALQNKLLRGTKLDIRYSISKENPSQKDTSKGA--LLVNNLDSSISNQELNRLVKSYGEV 328 Query: 466 VSV 474 + Sbjct: 329 KEI 331 >At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 130 Score = 31.1 bits (67), Expect = 0.47 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Frame = +1 Query: 301 HKIDGRIVEPIRAVP--REEIKRPEASA---TVKKLFVAGLKQDIEEEDLREYFSTFGNI 465 H ++ P+R + + + EAS+ ++ LFV G + E L++ FS FG + Sbjct: 25 HTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQV 84 Query: 466 VSVSVVTDKETGKKR 510 + + + +KR Sbjct: 85 TNEHYFSGSKNHRKR 99 >At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative similar to RNA-directed RNA polymerase [Lycopersicon esculentum] gi|4038592|emb|CAA71421 Length = 1133 Score = 31.1 bits (67), Expect = 0.47 Identities = 22/123 (17%), Positives = 55/123 (44%), Gaps = 2/123 (1%) Frame = +1 Query: 115 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 294 K+++ G + T + +K F E + + V +++ +K + + + V ++ N Sbjct: 390 KIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTN 449 Query: 295 RPHKIDGRIVEPIRAVPR--EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 468 +++ + E I P+ E + + +++ + ++ ED+RE+ F I Sbjct: 450 IYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIR 509 Query: 469 SVS 477 S+S Sbjct: 510 SIS 512 >At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing protein low similarity to prediabetic NOD sera-reactive autoantigen [Mus musculus] GI:6670773, anaphase-promoting complex subunit 7 [Homo sapiens] GI:6180015; contains Pfam profile PF00515: TPR Domain Length = 558 Score = 31.1 bits (67), Expect = 0.47 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 178 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 65 A ++L+ + F+ R HR ++ Q LH + R PK S Sbjct: 43 AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80 >At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to SP|O59800 Cell cycle control protein cwf5 {Schizosaccharomyces pombe}; contains Pfam profile: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain) Length = 483 Score = 31.1 bits (67), Expect = 0.47 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +1 Query: 67 KPSESGD-DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243 K E G + E + R L++GGL+ R + +++ + GEI + ++ + K Sbjct: 212 KAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KAC 265 Query: 244 GFITYSQAHMVDEAQNNRPHKI 309 F+TY+ ++A +++ Sbjct: 266 AFVTYTTREGAEKAAEELSNRL 287 >At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing protein Length = 90 Score = 31.1 bits (67), Expect = 0.47 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSV 480 +V L+ D EE DL+ FS FG+++ +V Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNV 39 >At1g60200.1 68414.m06781 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF01480: PWI domain, PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 899 Score = 30.7 bits (66), Expect = 0.62 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 E+P+ T ++IG + D + E G + + +DP TK+ KGFGF + A Sbjct: 200 EKPQTT--IYIGKIATVENDFMMS-ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254 >At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Length = 422 Score = 30.3 bits (65), Expect = 0.82 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +1 Query: 328 PIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKK 507 PIR E +P+A + +FVA L D E L E F +FG I + KK Sbjct: 258 PIRKQASAESIKPQAQGS--SIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKK 315 Query: 508 RGFG 519 G Sbjct: 316 NCIG 319 >At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to Heterogeneous nuclear ribonucleoprotein SP|P55795, SP|P31943, SP|P52597 {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 289 Score = 29.9 bits (64), Expect = 1.1 Identities = 24/93 (25%), Positives = 37/93 (39%) Frame = +1 Query: 94 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 273 E+ E+T L + GL Y + EF+ + I V + ++ G F+ + Sbjct: 194 EKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEE 253 Query: 274 VDEAQNNRPHKIDGRIVEPIRAVPREEIKRPEA 372 A I R VE + REE +R EA Sbjct: 254 ARRAMAKDKMSIGSRYVE-LFPTTREEARRAEA 285 >At1g53650.1 68414.m06105 RNA-binding protein, putative similar to RNA-binding protein GB:AAA86641 GI:1174153 from [Arabidopsis thaliana] Length = 314 Score = 29.9 bits (64), Expect = 1.1 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 12/153 (7%) Frame = +1 Query: 70 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 249 P + E R +++ +D T+ L + G++VD + DP + F F Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR--FAF 171 Query: 250 ITYSQAHMVDEAQN-------NRPHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLF 396 + +S A + P ++ + P+ +PR E +R S T+ + Sbjct: 172 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTI---Y 228 Query: 397 VAGLKQDIEEEDLREYF-STFGNIVSVSVVTDK 492 + ++ E+D+ +F S G + + ++ D+ Sbjct: 229 CTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQ 261 >At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing protein Length = 710 Score = 29.5 bits (63), Expect = 1.4 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +1 Query: 118 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 243 LF+G L + TTD+ L+ ++G + +V + + +SKG+ Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGY 277 >At4g38440.1 68417.m05432 expressed protein Length = 1465 Score = 29.5 bits (63), Expect = 1.4 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +1 Query: 271 MVDEAQNNRPHKIDGRIVEP-IRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447 + DE N + +G V P + A+P+E+ + ++ A ++ DLR F Sbjct: 266 ITDETAKNS--RTEGHFVTPKVMAIPKEKSVVQKPGIAQGFVWDAWTERVEAARDLR--F 321 Query: 448 STFGNIVSVSVVTDKETGKK 507 S GN+V VV+ ETG K Sbjct: 322 SFDGNVVEEDVVSPAETGGK 341 >At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (U1-70k) Length = 204 Score = 29.5 bits (63), Expect = 1.4 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +1 Query: 61 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI 192 N P+ +GD Y + LF+ L+Y +++S +K +E +G I Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPI 164 >At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 420 Score = 29.1 bits (62), Expect = 1.9 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +1 Query: 334 RAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV-----VTDKET 498 R P EI+ P+ + + V L +D E++RE F G+I SVS+ V + E Sbjct: 180 RLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEK 235 Query: 499 GKKR 510 G K+ Sbjct: 236 GGKK 239 >At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing protein contains similarity to RNA-binding protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 422 Score = 29.1 bits (62), Expect = 1.9 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +1 Query: 334 RAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV-----VTDKET 498 R P EI+ P+ + + V L +D E++RE F G+I SVS+ V + E Sbjct: 180 RLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEK 235 Query: 499 GKKR 510 G K+ Sbjct: 236 GGKK 239 >At5g13655.1 68418.m01588 hypothetical protein Length = 395 Score = 29.1 bits (62), Expect = 1.9 Identities = 12/51 (23%), Positives = 28/51 (54%) Frame = +1 Query: 160 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 312 L ++ ++W +I+ ++ KD T +S G++ + H + +++R H D Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351 >At5g09830.1 68418.m01137 BolA-like family protein contains Pfam profile: PF01722 BolA-like protein Length = 93 Score = 29.1 bits (62), Expect = 1.9 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +2 Query: 227 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQYEQFQGKRLKDQ 367 ++Q + L LKPI L + I G + E+ EQF+GKRL ++ Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50 >At3g14450.1 68416.m01831 RNA-binding protein, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies) Length = 327 Score = 29.1 bits (62), Expect = 1.9 Identities = 25/141 (17%), Positives = 59/141 (41%), Gaps = 14/141 (9%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +++ +D T+ L + G++VD + DP + F F+ ++ EA + Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFADDQGAHEALS 198 Query: 292 NRPHKIDGRIV--EPIRAVPREEIKRP-----------EASATVKKLFVAGLKQDIEEED 432 + G ++ P+R +P + P E + ++ + + + + D Sbjct: 199 -----LGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQAD 253 Query: 433 LREYF-STFGNIVSVSVVTDK 492 +R +F S G + + ++ D+ Sbjct: 254 VRNFFESACGEVTRLRLLGDQ 274 >At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear transport factor 2 (NTF2) domain Length = 1294 Score = 29.1 bits (62), Expect = 1.9 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = +1 Query: 100 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 279 P + + + L T + ++ ++Q+GEI V + + KRS +GF+ + + + Sbjct: 1072 PANNAAICVKNLPLNATIALVENAFKQFGEIRRGGV--EVRNKRSFSYGFVEFKEENAAQ 1129 Query: 280 EAQNNRPHKIDGRIV 324 A P ID R V Sbjct: 1130 RAIKASPVTIDLRSV 1144 >At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 363 Score = 28.7 bits (61), Expect = 2.5 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 97 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 216 E E + L++GGL+ R + + + + +GE+ + VM + Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259 >At4g10610.1 68417.m01735 RNA-binding protein, putative Length = 336 Score = 28.3 bits (60), Expect = 3.3 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 12/147 (8%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +++ +D + T+ L + +G++VD + DP + F FI ++ A N Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR--FAFIEFTDEVGARTALN 207 Query: 292 NR-------PHKI--DGRIVEPIRA--VPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 438 P K+ + P+ +PR E +R + T+ + + + + + D++ Sbjct: 208 LSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTI---YCTNIDKKLTQTDIK 264 Query: 439 EYF-STFGNIVSVSVVTDKETGKKRGF 516 +F S G + + ++ D + GF Sbjct: 265 LFFESVCGEVYRLRLLGDYHHPTRIGF 291 >At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1 GI:1279563 from [Medicago sativa] Length = 335 Score = 28.3 bits (60), Expect = 3.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 394 FVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 F A L D + L +YFS+FG I V V TG G+ Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGY 281 >At1g41855.1 68414.m04833 hypothetical protein Length = 261 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 217 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRI 321 P+ K KGFG + + + +E++N +PH + GR+ Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRV 48 >At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing protein low similarity to transcriptional repressor Not4-Np [Homo sapiens] GI:6856207; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) Length = 944 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Frame = +1 Query: 391 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 480 +++ GL ++ +EDL +EYF +G ++ VS+ Sbjct: 70 VYIVGLPLNLADEDLLQHKEYFGQYGKVLKVSM 102 >At5g50260.1 68418.m06224 cysteine proteinase, putative similar to cysteine endopeptidase precursor CysEP GI:2944446 from [Ricinus communis] Length = 361 Score = 27.9 bits (59), Expect = 4.4 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Frame = +1 Query: 130 GLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 297 GLD+ D +SL E YE+W V + K KR F ++ H+ + + ++ Sbjct: 20 GLDFHNKDVESENSLWELYERWRSHHTVARSLEEKAKR---FNVFKHNVKHIHETNKKDK 76 Query: 298 PHKIDGRIVEPIRAVPREEIKRPEASATVK 387 +K+ + + EE +R A + +K Sbjct: 77 SYKLK---LNKFGDMTSEEFRRTYAGSNIK 103 >At3g58940.1 68416.m06568 F-box family protein contains F-box domain Pfam:PF00646 Length = 618 Score = 27.9 bits (59), Expect = 4.4 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +1 Query: 301 HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF 447 H + + + + RE+ R S VKKL V G + I E+++ +F Sbjct: 342 HSVTDKCGDACDCISREDKGRSLISCPVKKLEVRGFRGTIREKEMIRHF 390 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 27.9 bits (59), Expect = 4.4 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +1 Query: 109 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 288 +R +++G L + +++ + ++G IVD+ + P R + F+ + + ++A Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAI 62 Query: 289 NNRP-HKIDG 315 R + +DG Sbjct: 63 KGRDGYNLDG 72 >At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing protein similar to SP|P34909 General negative regulator of transcription subunit 4 {Saccharomyces cerevisiae}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 989 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Frame = +1 Query: 391 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 480 +++ GL ++ +EDL +EYF +G ++ VS+ Sbjct: 111 VYIVGLPLNLADEDLLQRKEYFGQYGKVLKVSM 143 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 27.9 bits (59), Expect = 4.4 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 291 R +++G L +++ + ++G IVD+ + P R G+ F+ + D+A Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIY 63 Query: 292 NRP-HKIDG 315 R + DG Sbjct: 64 GRDGYDFDG 72 >At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana]; conatins Pfam profile: PF00067 cytochrome P450 Length = 407 Score = 27.5 bits (58), Expect = 5.8 Identities = 13/63 (20%), Positives = 28/63 (44%) Frame = +1 Query: 88 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 267 D E + + G Y D ++ E+WGE+ ++ ++ K K F +I ++ Sbjct: 19 DLETCTRPKMVTTGLFSYNFKDIGFTQYGEEWGEMKKLIGLELFSPKTQKSFRYIREEES 78 Query: 268 HMV 276 ++ Sbjct: 79 DLL 81 >At2g33440.1 68415.m04099 splicing factor family protein similar to Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary factor large subunit) {Homo sapiens} SP|P26368, {Mus musculus} SP|P26369; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 247 Score = 27.5 bits (58), Expect = 5.8 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +1 Query: 388 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGF 516 K+F+ G + I E L E S FG + + V++ + ++ F Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83 >At1g78810.2 68414.m09186 expressed protein Length = 480 Score = 27.5 bits (58), Expect = 5.8 Identities = 12/30 (40%), Positives = 22/30 (73%) Frame = -3 Query: 465 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 376 N+S+ +++S+VF NV L+S Y++ + GG Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372 >At1g78810.1 68414.m09185 expressed protein Length = 481 Score = 27.5 bits (58), Expect = 5.8 Identities = 12/30 (40%), Positives = 22/30 (73%) Frame = -3 Query: 465 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 376 N+S+ +++S+VF NV L+S Y++ + GG Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372 >At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 899 Score = 27.5 bits (58), Expect = 5.8 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +2 Query: 278 MKLKIIGLTKLTEELSSQYEQFQG 349 M+L G+ KL + LS +Y+QF+G Sbjct: 1 MELVSFGVEKLWDRLSQEYDQFKG 24 >At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 399 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 424 EEDLREYFSTFGNIVSVSV 480 EED+ +YFSTFG + V + Sbjct: 169 EEDVSDYFSTFGPVQDVRI 187 >At3g58950.1 68416.m06569 F-box family protein contains F-box domain Pfam:PF00646 Length = 417 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = +1 Query: 301 HKIDGRIVEPIRAVPREEIKRPEASATVKKLFVAGLKQDIEE-EDLREYFSTFGNIVSVS 477 H + + + V RE+ R S VKKL + G + I E E ++ + +F + V Sbjct: 306 HFVTNKCGDACDYVSREDKGRSLVSCPVKKLQIKGFRGTIRELEMIKHFLYSFRCLEKVE 365 Query: 478 VVTDKETGKKR 510 + + E G+ R Sbjct: 366 IYAE-EKGRTR 375 >At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196 Length = 353 Score = 27.1 bits (57), Expect = 7.7 Identities = 13/50 (26%), Positives = 26/50 (52%) Frame = +1 Query: 112 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 261 R +++ +D + T+ +L + G++VD V DP + F FI ++ Sbjct: 169 RTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR--FAFIEFT 216 >At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to similar to phosphatidylinositol transfer-like protein IV (GI:14486707) [Lotus japonicus] and Phosphatidylinositol Transfer Protein GB:2780955 GI:2780955 [Saccharomyces cerevisiae] Length = 621 Score = 27.1 bits (57), Expect = 7.7 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = +2 Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304 +D++ P+ LH ++ G L QK D K + +H+L+P L KL ++I + Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304 Query: 305 KLTEELSSQYEQF 343 +L E L F Sbjct: 305 QLPEFLGGSCSCF 317 >At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to similar to phosphatidylinositol transfer-like protein IV (GI:14486707) [Lotus japonicus] and Phosphatidylinositol Transfer Protein GB:2780955 GI:2780955 [Saccharomyces cerevisiae] Length = 625 Score = 27.1 bits (57), Expect = 7.7 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = +2 Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304 +D++ P+ LH ++ G L QK D K + +H+L+P L KL ++I + Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304 Query: 305 KLTEELSSQYEQF 343 +L E L F Sbjct: 305 QLPEFLGGSCSCF 317 >At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to similar to phosphatidylinositol transfer-like protein IV (GI:14486707) [Lotus japonicus] and Phosphatidylinositol Transfer Protein GB:2780955 GI:2780955 [Saccharomyces cerevisiae] Length = 625 Score = 27.1 bits (57), Expect = 7.7 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = +2 Query: 128 VDSTIEPQILH*KNSMSNGEKL*M*L**KTQKPRDQKDLDLLHILKPIWLMKL-KIIGLT 304 +D++ P+ LH ++ G L QK D K + +H+L+P L KL ++I + Sbjct: 245 IDNSYYPETLHRMYIVNAGTGFKKMLWPAAQKFLDAKTIAKIHVLEPKSLFKLHEVIDSS 304 Query: 305 KLTEELSSQYEQF 343 +L E L F Sbjct: 305 QLPEFLGGSCSCF 317 >At1g48880.1 68414.m05476 hypothetical protein Length = 485 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/63 (25%), Positives = 28/63 (44%) Frame = -3 Query: 432 VFFFNVLLQSSYKQLFNGGTSFWSFNLFPWNCSYWLDNSSVNFVRPIILSFINHMGLRIC 253 V +V S+++ +G WS N +CS+W + I+L F+ +R C Sbjct: 390 VSILDVTSMSAFRS--DGHVGLWSDNPLVPDCSHWCLPGVPDIWNEILLFFLFRQPVRSC 447 Query: 252 NKS 244 + S Sbjct: 448 SSS 450 >At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis thaliana} Length = 729 Score = 27.1 bits (57), Expect = 7.7 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +1 Query: 331 IRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGN 462 +RA+ +PE A +++L L++ E++L+ S+ GN Sbjct: 65 VRALKASRAAKPEIDAAIEQLNKLKLEKSTVEKELQSIISSSGN 108 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,358,403 Number of Sequences: 28952 Number of extensions: 200260 Number of successful extensions: 1137 Number of sequences better than 10.0: 229 Number of HSP's better than 10.0 without gapping: 824 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1068 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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