Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G04f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09954-1|AAB01041.1|  192|Homo sapiens ribosomal protein L9 prot...   149   4e-36
U09953-1|AAB01040.1|  192|Homo sapiens ribosomal protein L9 prot...   149   4e-36
U21138-1|AAA63752.1|  192|Homo sapiens ribosomal protein L9 prot...   149   8e-36
D14531-1|BAA03401.1|  192|Homo sapiens rat ribosomal protein L9 ...   149   8e-36
BC100285-1|AAI00286.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC070214-1|AAH70214.1|  192|Homo sapiens RPL9 protein protein.        149   8e-36
BC066318-1|AAH66318.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC031906-1|AAH31906.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC012149-1|AAH12149.1|  192|Homo sapiens RPL9 protein protein.        149   8e-36
BC007967-1|AAH07967.1|  192|Homo sapiens RPL9 protein protein.        149   8e-36
BC004206-1|AAH04206.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC004156-1|AAH04156.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC000483-1|AAH00483.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
AY376242-1|AAQ82909.1|  192|Homo sapiens ribosomal protein L9 is...   149   8e-36
AB062431-1|BAB93494.1|  192|Homo sapiens ribosomal protein L9 pr...   149   8e-36
BC111370-1|AAI11371.1|  192|Homo sapiens Unknown (protein for MG...   146   4e-35
AK130277-1|BAC85318.1|  134|Homo sapiens protein ( Homo sapiens ...   117   3e-26
AK126078-1|BAC86427.1|  129|Homo sapiens protein ( Homo sapiens ...    30   5.7  
BC107753-1|AAI07754.1|  376|Homo sapiens RAD51 homolog C (S. cer...    29   7.5  
AY623112-1|AAT38108.1|  376|Homo sapiens RAD51 homolog C (S. cer...    29   7.5  
AF029669-1|AAC39604.1|  376|Homo sapiens Rad51C protein.               29   7.5  

>U09954-1|AAB01041.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (362), Expect = 4e-36
 Identities = 66/116 (56%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V+IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVEIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>U09953-1|AAB01040.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (362), Expect = 4e-36
 Identities = 66/116 (56%), Positives = 92/116 (79%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V+IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVEIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>U21138-1|AAA63752.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>D14531-1|BAA03401.1|  192|Homo sapiens rat ribosomal protein L9
           homologue protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC100285-1|AAI00286.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC070214-1|AAH70214.1|  192|Homo sapiens RPL9 protein protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC066318-1|AAH66318.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC031906-1|AAH31906.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC012149-1|AAH12149.1|  192|Homo sapiens RPL9 protein protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC007967-1|AAH07967.1|  192|Homo sapiens RPL9 protein protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC004206-1|AAH04206.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC004156-1|AAH04156.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC000483-1|AAH00483.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>AY376242-1|AAQ82909.1|  192|Homo sapiens ribosomal protein L9
           isoform protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>AB062431-1|BAB93494.1|  192|Homo sapiens ribosomal protein L9
           protein.
          Length = 192

 Score =  149 bits (360), Expect = 8e-36
 Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL--LKVEKW 353
           MK I++NQ V IP+ + + +K R V VKGPRG L+R+F H+ V++ ++  +   L+V+KW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  E  S++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116


>BC111370-1|AAI11371.1|  192|Homo sapiens Unknown (protein for
           MGC:131531) protein.
          Length = 192

 Score =  146 bits (354), Expect = 4e-35
 Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 2/116 (1%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR--LLKVEKW 353
           MK I+++Q V +PD + V +K R VTVKGPRG L R F H+ +++ ++  +   L+V KW
Sbjct: 1   MKTILSSQTVDLPDNVEVRLKGRTVTVKGPRGKLVREFNHINLELSLLGKKNKKLRVVKW 60

Query: 354 FGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           +G++KELA VRT+CSHV+NMIKGVT GF+YKMR+VYAHFPIN V  EG +++EIRN
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVMQEGGAMVEIRN 116


>AK130277-1|BAC85318.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26767 fis, clone PRS02825. ).
          Length = 134

 Score =  117 bits (281), Expect = 3e-26
 Identities = 58/114 (50%), Positives = 79/114 (69%)
 Frame = +3

Query: 180 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 359
           MK I +NQ V IP+ + + +K   VTV GPRG ++R+F H+ V++ +   RL    +W G
Sbjct: 1   MKTIHSNQTVVIPENVNITLKRCTVTVNGPRGTMQRDFSHINVELSL--KRLWSATRW-G 57

Query: 360 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRN 521
           ++KELA VRTV S+V+N IKGVT GF YKMR+ YAHFP + V  E  S++EIRN
Sbjct: 58  NRKELATVRTVGSYVQNTIKGVTLGFCYKMRSAYAHFPTDIVIQEDGSLVEIRN 111


>AK126078-1|BAC86427.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44090 fis, clone TESTI4041903. ).
          Length = 129

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 349 FSTFRRRGFTMRMSTAKCLKFLLRTPRGP 263
           F   + RGF++ + TA+   FL R P+GP
Sbjct: 25  FMVTQSRGFSLALPTAETCSFLARYPQGP 53


>BC107753-1|AAI07754.1|  376|Homo sapiens RAD51 homolog C (S.
           cerevisiae) protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = +3

Query: 105 RKSVEKFGKHL*GYVSYLLLFLGPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 284
           RK++E F   L   +S++  F   +  +++A Q   +PD L+ H K RLV V G     +
Sbjct: 193 RKALEDFT--LDNILSHIYYFRCRDYTELLA-QVYLLPDFLSEHSKVRLVIVDGIAFPFR 249

Query: 285 RNFKHLAVDIRMVN 326
            +   L++  R++N
Sbjct: 250 HDLDDLSLRTRLLN 263


>AY623112-1|AAT38108.1|  376|Homo sapiens RAD51 homolog C (S.
           cerevisiae) protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = +3

Query: 105 RKSVEKFGKHL*GYVSYLLLFLGPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 284
           RK++E F   L   +S++  F   +  +++A Q   +PD L+ H K RLV V G     +
Sbjct: 193 RKALEDFT--LDNILSHIYYFRCRDYTELLA-QVYLLPDFLSEHSKVRLVIVDGIAFPFR 249

Query: 285 RNFKHLAVDIRMVN 326
            +   L++  R++N
Sbjct: 250 HDLDDLSLRTRLLN 263


>AF029669-1|AAC39604.1|  376|Homo sapiens Rad51C protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 22/74 (29%), Positives = 39/74 (52%)
 Frame = +3

Query: 105 RKSVEKFGKHL*GYVSYLLLFLGPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLK 284
           RK++E F   L   +S++  F   +  +++A Q   +PD L+ H K RLV V G     +
Sbjct: 193 RKALEDFT--LDNILSHIYYFRCRDYTELLA-QVYLLPDFLSEHSKVRLVIVDGIAFPFR 249

Query: 285 RNFKHLAVDIRMVN 326
            +   L++  R++N
Sbjct: 250 HDLDDLSLRTRLLN 263


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,583,617
Number of Sequences: 237096
Number of extensions: 1614919
Number of successful extensions: 2527
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2510
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)