Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   3.0  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   6.8  

>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 329 FISAA*YIYLCWNYSL*SGCY-ESLINICN*H*HSFKSQNERVHSL 463
           F+S    ++ C++  +    Y E++I ICN H   FK+++  ++ +
Sbjct: 296 FVSVLDALFECFDVPVVQYMYQENIIGICNEHFEHFKNESGEIYGV 341


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 264 IHWTDFLRYRC*KLKFAV*NSKIKRQNRMNKFVFITLLHYIIFIM 130
           +HW  F       L        +K+ +  N   FITLLH+ + ++
Sbjct: 223 MHWNFFFTLGFMALGVFFFRRSLKKVSYFNLATFITLLHHCLLVL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,251
Number of Sequences: 5004
Number of extensions: 38182
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)