BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS309G01f (521 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0642 + 18289461-18290897,18291586-18291666 29 2.3 06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 4.0 06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892... 28 5.2 02_02_0457 + 10503801-10507358 28 5.2 02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 27 6.9 05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 9.1 02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399... 27 9.1 >04_03_0642 + 18289461-18290897,18291586-18291666 Length = 505 Score = 29.1 bits (62), Expect = 2.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 497 LYLHDDLKRCFSNCALF 447 +YL D+KRCFS CA++ Sbjct: 391 VYLPQDIKRCFSICAMY 407 >06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 Length = 1091 Score = 28.3 bits (60), Expect = 4.0 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -1 Query: 497 LYLHDDLKRCFSNCALF 447 LYL +LKRCF+ C++F Sbjct: 469 LYLPQELKRCFAFCSMF 485 >06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023, 8929132-8929399 Length = 883 Score = 27.9 bits (59), Expect = 5.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 497 LYLHDDLKRCFSNCALF 447 LYL +LKRCF+ C +F Sbjct: 430 LYLPQELKRCFAFCCMF 446 >02_02_0457 + 10503801-10507358 Length = 1185 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -1 Query: 497 LYLHDDLKRCFSNCALF 447 LYL LKRCFS CAL+ Sbjct: 470 LYLPFHLKRCFSFCALY 486 >02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 Length = 1000 Score = 27.5 bits (58), Expect = 6.9 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 497 LYLHDDLKRCFSNCALF 447 LYL LKRCFS CA++ Sbjct: 457 LYLPTHLKRCFSFCAVY 473 >05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485, 16619577-16619848,16620528-16620633,16620715-16620872, 16621527-16621714,16621786-16621855,16622814-16622984, 16624363-16624838,16625625-16625871,16626158-16626490, 16627329-16627412,16627751-16627843,16627966-16628025, 16628582-16628680,16628830-16628970,16629207-16629287, 16629895-16629966,16631160-16631231,16632083-16632176, 16632257-16632339,16632455-16632532,16632914-16632970, 16633055-16633132,16633236-16633357,16633463-16633623, 16634419-16634495,16634570-16634683,16634857-16634958, 16635368-16635436,16635437-16635577,16635936-16636109, 16636934-16637063,16637137-16637276,16637369-16637446, 16637813-16637911,16638408-16638803 Length = 1749 Score = 27.1 bits (57), Expect = 9.1 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -2 Query: 271 ELYSLDRLFEISLLKIKICGLKF 203 EL++L RLF + L I++CG ++ Sbjct: 1480 ELHNLKRLFLLQLKNIRVCGPRY 1502 >02_05_0378 - 28438918-28439064,28439280-28439313,28439859-28439963, 28440402-28441558 Length = 480 Score = 27.1 bits (57), Expect = 9.1 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +1 Query: 283 VPCCNVLIK*HVNIPIYKCCVIYIFV 360 VPC + +K H N P+ +C + ++ V Sbjct: 186 VPCIDTWLKSHSNCPLCRCNIAFVTV 211 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,205,263 Number of Sequences: 37544 Number of extensions: 188250 Number of successful extensions: 358 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 358 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1142636160 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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