Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309G01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096)                     27   9.4  
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.4  

>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   GRWRCIRYLGYLSTLQRNGCIDLNDFL-QDYVCR 106
           G +RCI   GY  +  R  C+D+N+ L Q  +CR
Sbjct: 427 GAFRCICNKGYELSSDRTQCVDINECLTQGEMCR 460


>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1147

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   GRWRCIRYLGYLSTLQRNGCIDLNDFLQD 94
           G ++CI   G+ ST     C+D+N+ L D
Sbjct: 234 GGYQCICNRGFESTADMKDCVDINECLVD 262


>SB_5124| Best HMM Match : VWD (HMM E-Value=0.0096)
          Length = 264

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 166 YEFIHAILPFYFRISDRKF*FLTTISQKVC 255
           YEF HA L    R+  R    +T  SQ +C
Sbjct: 145 YEFRHAHLKLRLRVEGRFLSLITDFSQNIC 174


>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 519 LRLTSNRALPTR*FKTVFLKLCTLSFCDLNE 427
           L LTS + +P   F+   L+L TLS CDL +
Sbjct: 481 LELTSLKGVPMSLFEMKQLELLTLSECDLTK 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,304
Number of Sequences: 59808
Number of extensions: 259655
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)