Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309F09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 189 2e-49
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 1.7
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.0
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 26 3.0
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 3.9
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 6.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 9.0
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 25 9.0
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 9.0
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 189 bits (461), Expect = 2e-49
Identities = 85/148 (57%), Positives = 109/148 (73%)
Frame = +1
Query: 34 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 213
E+TFI VKPD VQRGL+G II +FE KG+KL LKF+ PS +L+++HY++ +PF+ L
Sbjct: 4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63
Query: 214 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSVE 393
V +M+SGPV M+WEG VKTGR MLGA+NP DS PGTIRGD I +GRN+ HGSDS+E
Sbjct: 64 VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123
Query: 394 SAKKEIGLWFTDKEVVGWTPANENWVYE 477
SA +EI LWF E+ + E W+YE
Sbjct: 124 SANREIKLWFQPSEIQVYDRTIEPWIYE 151
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 438 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 262
N FV P R + RT+ TP+L E ++ R+S V C H +S N
Sbjct: 5 NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62
Query: 261 ALPYHRDHR 235
++ R H+
Sbjct: 63 SVRNTRTHK 71
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 119 KPFFSKRSIMVPTRPRCTPSGLT 51
KPF +KRS ++P RP T L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 211 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 375
L++ P++ V GL +++ G ++ T+P+ GT+ GD C+++G NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 311 AGLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 192
+G + P RP T+L P T+ TT + RP K +
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 241 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 408
+ V EG N + GRQ+L T+P + + +G I H SD + + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447
Query: 409 IGLWFTDKEV 438
F+ E+
Sbjct: 448 SAFGFSAMEL 457
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 477 LINPVFICRCPAHNFFVRKPEAYFLFSRF 391
+INPVF R PAH K + F+ S F
Sbjct: 72 VINPVFDPRKPAHELKGNKRDNTFVTSLF 100
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 122 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYY 6
++P+F K + + P+ T + V+SRC + YY
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYY 199
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 165 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLF 25
++F W Y+ ++ D L ET N K T+RL H L+LF
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,480
Number of Sequences: 5004
Number of extensions: 43919
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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