Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   1.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.8  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.0  

>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 166 FSNAKVRVKLLPTVKYSPQA 225
           FSN  +  KL+P +KY P+A
Sbjct: 221 FSNISLSTKLMPMIKYVPRA 240


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 245 SARETPWTGAHFKVGWYVTKKISGNAL*MVAVAPGSMDELYSGGGRCDGKNEKMVSSQTI 424
           SA+E+  +       +   K+ SG A     V   S +   S       +NE +    TI
Sbjct: 305 SAKESLTSSTRLSTSYKTRKRSSGVAFSSETVTSSSKERKRSV------ENEMLKPHPTI 358

Query: 425 HQSTPQLLRYDKLN 466
            +S P++  +DK N
Sbjct: 359 FESPPEITSFDKSN 372


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 425 ELFEMIPSSRFYHRTARHRSRVHPYYLEPL 336
           E +  IPS R  H+  R   RVH   ++PL
Sbjct: 837 EKYTSIPSLRDLHKPTRPLKRVHWQRVDPL 866


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 ELISKSDGT*QKRSLETHCRW 332
           E+ S SDG+ QKRS++    W
Sbjct: 94  EITSPSDGSLQKRSMDNSGSW 114


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 275 ELPSTVFPERYDTSSNMACGEYFTV 201
           E+ S +  E  +   N+ACG +F V
Sbjct: 411 EIESKIHAEAVEEGVNLACGNWFVV 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,196
Number of Sequences: 5004
Number of extensions: 43316
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)