Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0594 + 4428440-4429837                                           29   3.0  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   4.0  
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610           27   6.9  
08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144           27   6.9  
04_03_0115 - 11428116-11429594                                         27   6.9  
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    27   6.9  
01_06_0877 + 32662978-32663179,32663718-32663951,32664080-326641...    27   6.9  
04_04_0716 + 27513201-27513854                                         27   9.1  
04_03_0117 - 11461460-11462755                                         27   9.1  

>07_01_0594 + 4428440-4429837
          Length = 465

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 327 RWSQWLQVVWMNSTPVAGGAMV---KTRRWYHLKQFIRA 434
           RW++W   V   S+   GGA+V     RRW+  K ++ A
Sbjct: 334 RWARWWLAVDTASSSAGGGALVLVATERRWWKQKMYMCA 372


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 356 DELYSGGGRCDGKNEKMVSSQTIHQSTPQ--LLRYDKLN*LRVFESAFLC 499
           D  YSGG   D   E+  SS T H S  +   LR  +LN LR + +  +C
Sbjct: 304 DGEYSGGDDDDDDEEEEDSSDTEHDSEAENNKLRTYELNRLRYYYAVVVC 353


>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
          Length = 439

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = -1

Query: 419 FEMIPSSRFYHRTARHRSRVHPYYLEPLRPSTVRFQRSFLSRTIRL*NELPSTVFPERYD 240
           F    S+  Y     H   +H   + PL+PST  F R     +  L    P    P ++ 
Sbjct: 94  FSATGSTNTYSYVLYHSGNIHDVVIGPLQPSTTYFYRCSNDTSRELSFRTPPASLPFKFV 153

Query: 239 TSSNM 225
            + ++
Sbjct: 154 VAGDL 158


>08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144
          Length = 276

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 119 EHTANLIVSDYRRPWTS 169
           +H A L VSDY R WTS
Sbjct: 25  QHDAGLRVSDYNRVWTS 41


>04_03_0115 - 11428116-11429594
          Length = 492

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 376 ATGVEFIHTTWSHCDHLQCVSRDLFC 299
           A G    H+ W+H  HL+    D FC
Sbjct: 155 AFGSVVFHSLWNHLPHLRAPGDDAFC 180


>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 332 VAVAPGSMDELYSGGGRCDGKNEKMVSSQTIHQSTPQLLRYD 457
           + V+PG    +++ G   DG  +KM+    +H  T Q+L  D
Sbjct: 329 IPVSPGRCRVIWANGYNLDGWFDKMIPRWWLHIKTNQVLDSD 370


>01_06_0877 +
           32662978-32663179,32663718-32663951,32664080-32664143,
           32664250-32664379,32664483-32664624,32664806-32665063,
           32665168-32665252,32665609-32665711,32666281-32666406,
           32666476-32666589,32666769-32666887,32666993-32667080,
           32667154-32667246,32667325-32667414,32667522-32667641,
           32667782-32667877
          Length = 687

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 165 LQQCQGQSQTAAYRKVLSTSHV 230
           LQ+C  +S  AAYRK ++ +++
Sbjct: 88  LQECMAESSHAAYRKAINAAYI 109


>04_04_0716 + 27513201-27513854
          Length = 217

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 275 ELPSTVFPERYDTSSNMACGEYFTV 201
           +LP  +   RY+TSS+++CG  + V
Sbjct: 173 DLPDLLLDLRYETSSSLSCGASWAV 197


>04_03_0117 - 11461460-11462755
          Length = 431

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 376 ATGVEFIHTTWSHCDHLQCVSRDLFC 299
           A G    H+ W+H  HL+    D FC
Sbjct: 155 AFGSVVYHSLWNHLPHLRAPGDDAFC 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,016
Number of Sequences: 37544
Number of extensions: 291355
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)