Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309F07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16981| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.58
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_31096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_16355| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1) 29 3.1
SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5) 29 3.1
SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3) 29 3.1
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 28 4.1
SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049) 28 4.1
SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 28 5.4
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 5.4
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83) 27 7.1
>SB_16981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 303 FVTYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDSDLG 175
F+ HP + V G+S A+ ++F+ L YG ++ D G
Sbjct: 4 FIRQHPVITGLAVAGISAAVAYYFRKSLLSTFYGEEESGEDEG 46
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 31.1 bits (67), Expect = 0.58
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -1
Query: 377 RHRSRVHPYYLEPLRPSTVRFQRSFLSRTIRL*NELPSTVFPE 249
R R HP PL S+ SF SRTI N LP+ +F E
Sbjct: 823 RKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNE 865
>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 303 FVTYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDSDLG 175
F+ HP + V G+S A ++F+ L YG ++ D G
Sbjct: 371 FIRQHPVITGLAVAGISAAAAYYFRKSLVSTFYGEEESGEDEG 413
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 303 FVTYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDSD 181
F+ HP + V G+S A ++F+ L YG ++ D
Sbjct: 247 FIRQHPVITGLAVAGISAAAAYYFRKSLVSPFYGEEESGED 287
>SB_31096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -3
Query: 303 FVTYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDSDLG 175
F+ HP + V G+S A ++F+ + YG ++ D G
Sbjct: 4 FIRQHPVITGLAVAGISAAAAYYFRKSIVSTFYGEEESGEDEG 46
>SB_16355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 303 FVTYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDSD 181
F+ HP + V G+S A ++F+ L YG ++ D
Sbjct: 4 FIRQHPVITGLAVAGISAAAAYYFRKSLVNTFYGEEESGED 44
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -1
Query: 386 RTARHRSRVHPYYLEPLRPSTVRFQRSFLSRTIRL*NELP 267
RT + RS HP L P T F+ SF RTI+ N+LP
Sbjct: 346 RTRQLRSS-HPDKFIELCPRTEAFKNSFFCRTIKEWNKLP 384
>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
Length = 352
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -3
Query: 297 TYHPTLK*APVHGVSRAL*HFFKHGLWRVLYGRQQFDS---DLGIAEVHGRR*SLTIKLA 127
TY AP +G SR H + LW YG + + DL + E H KL
Sbjct: 233 TYGTLTHRAPTYGTSRMEPHLWNPNLWNPTYGSPTYGTPRMDLQLMEPH------VWKLN 286
Query: 126 VCSSAYK 106
+C+ Y+
Sbjct: 287 LCNPTYR 293
>SB_7946| Best HMM Match : DUF434 (HMM E-Value=7.5)
Length = 294
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 386 RTARHRSRVHPYYLEPLRPSTVRFQRSFLSRTIRL*NELP 267
RT + RS HP L P+T ++ SF RTI+ N+LP
Sbjct: 237 RTRQLRSS-HPDKFIELCPTTEAYKNSFFCRTIKEWNKLP 275
>SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)
Length = 324
Score = 28.7 bits (61), Expect = 3.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 263 WTGAHFKVGWYV 298
W GAHF+ GWY+
Sbjct: 73 WRGAHFREGWYI 84
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Frame = -1
Query: 434 CSDELFEM--IPSSRFYHRTARHRS------RVHPYYLEPLR 333
CS F + PSS FY+R RH R HP+Y LR
Sbjct: 1229 CSPSSFSLPCSPSSSFYYRVLRHHPFHYRVLRHHPFYYRVLR 1270
>SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)
Length = 780
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 386 RTARHRSRVH-PYYLEPLRPSTVRFQRSFLSRTIRL*NELP 267
R+ +HR R P YL P ++R F+ I + NELP
Sbjct: 513 RSVKHRRRKSTPSYLSDESPCYTGYERKFIRMNIVVINELP 553
>SB_5794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = -2
Query: 388 IAPPATGVEFIHTTWSHCDHLQCVSRDLFCHVPSDFEMSSRPRCFPSAMTLL 233
+ PP E W + +++ C + D H + ++ P FP T+L
Sbjct: 40 VKPPLVTAEDQMALWDNMEYIDCFATDHAPHTIEEKNSTNSPPGFPGLETML 91
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -1
Query: 386 RTARHRSRVHPYYLEPLRPSTVRFQRSFLSRTIRL*NELP 267
RT + RS + ++E L P T ++ SF RTI+ N+LP
Sbjct: 643 RTRQLRSSLPDKFIE-LCPRTEAYKNSFFCRTIKEWNKLP 681
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 338 VAPGSMDELYSGGGRCDGKNEKMVSSQTIHQS 433
V+PGS L++ G +C N ++S HQS
Sbjct: 2227 VSPGSNIALFADGAKCSRNNLVIISCPADHQS 2258
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 350 YLEPLRPSTVR-FQRSFLSRTIRL*NELPSTVFP 252
Y L P+ + F SF SRTI + N LP VFP
Sbjct: 814 YQFSLLPAKINAFLFSFYSRTIPVWNALPQAVFP 847
>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
Length = 533
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 358 IHTTWSHCDHLQCVSRDLFCHVPSDFEMSSRPRC 257
+HTT C LQC RD F +VP +S+R C
Sbjct: 265 MHTT--ACHRLQCALRDAFINVPI-LSVSARLSC 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,503
Number of Sequences: 59808
Number of extensions: 330800
Number of successful extensions: 921
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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