Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F07f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126276-1|BAC86512.1|  457|Homo sapiens protein ( Homo sapiens ...    33   0.80 
AL136131-5|CAI19963.2|  264|Homo sapiens mitochondrial ribosomal...    30   5.7  
BC010364-1|AAH10364.1|  196|Homo sapiens mitochondrial ribosomal...    29   9.9  
AL136131-6|CAC19510.1|  196|Homo sapiens mitochondrial ribosomal...    29   9.9  
AK001410-1|BAA91675.1|  196|Homo sapiens protein ( Homo sapiens ...    29   9.9  
AB049952-1|BAB41005.1|  196|Homo sapiens mitochondrial ribosomal...    29   9.9  

>AK126276-1|BAC86512.1|  457|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44290 fis, clone TRACH2019473. ).
          Length = 457

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
 Frame = +1

Query: 52  QILLDYHYNTAHQFFFIALVGRRAYGQFDCE*LPSPMDFSNAKVRVKLLPTVKYSPQAMF 231
           ++LLD  Y T      +   G RA G  DCE L + +         K++ T       +F
Sbjct: 212 KMLLDLGYTTFADTVLLDFTGIRAKGPIDCESLKTDLSIQTRNAEEKIMNTWYPKVINLF 271

Query: 232 EEVS*RSG---NTVDG--SSFQSRMVRDKKDLWKRTVDG 333
            +     G     +D   S   + M    KDL +RTV+G
Sbjct: 272 TKKEALEGVKPEKLDAFYSCVSTLMSNQLKDLLRRTVEG 310


>AL136131-5|CAI19963.2|  264|Homo sapiens mitochondrial ribosomal
           protein S18A protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 134 LIVSDYRRPWTSAMPRSESNCCLP*STLHKPCLKKCHSARETPW 265
           L++S + RP    +PR  +  C       + C+K  H A   PW
Sbjct: 87  LLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGRRPW 130


>BC010364-1|AAH10364.1|  196|Homo sapiens mitochondrial ribosomal
           protein S18A protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +2

Query: 134 LIVSDYRRPWTSAMPRSESNCCLP*STLHKPCLKKCHSARETPWTGAHFKVGWYVTKKIS 313
           L++S + RP    +PR  +  C       + C+K  H A   P        G     K  
Sbjct: 87  LLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQ 146

Query: 314 GNAL*MVAVAPGSMDELYSGGGR 382
            N   +   APGS+  +Y  G R
Sbjct: 147 LNRY-LTRWAPGSVKPIYKKGPR 168


>AL136131-6|CAC19510.1|  196|Homo sapiens mitochondrial ribosomal
           protein S18A protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +2

Query: 134 LIVSDYRRPWTSAMPRSESNCCLP*STLHKPCLKKCHSARETPWTGAHFKVGWYVTKKIS 313
           L++S + RP    +PR  +  C       + C+K  H A   P        G     K  
Sbjct: 87  LLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQ 146

Query: 314 GNAL*MVAVAPGSMDELYSGGGR 382
            N   +   APGS+  +Y  G R
Sbjct: 147 LNRY-LTRWAPGSVKPIYKKGPR 168


>AK001410-1|BAA91675.1|  196|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10548 fis, clone NT2RP2001969. ).
          Length = 196

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +2

Query: 134 LIVSDYRRPWTSAMPRSESNCCLP*STLHKPCLKKCHSARETPWTGAHFKVGWYVTKKIS 313
           L++S + RP    +PR  +  C       + C+K  H A   P        G     K  
Sbjct: 87  LLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQ 146

Query: 314 GNAL*MVAVAPGSMDELYSGGGR 382
            N   +   APGS+  +Y  G R
Sbjct: 147 LNRY-LTRWAPGSVKPIYKKGPR 168


>AB049952-1|BAB41005.1|  196|Homo sapiens mitochondrial ribosomal
           protein S18a protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +2

Query: 134 LIVSDYRRPWTSAMPRSESNCCLP*STLHKPCLKKCHSARETPWTGAHFKVGWYVTKKIS 313
           L++S + RP    +PR  +  C       + C+K  H A   P        G     K  
Sbjct: 87  LLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGLLPNHRPRLPEGVVPKSKPQ 146

Query: 314 GNAL*MVAVAPGSMDELYSGGGR 382
            N   +   APGS+  +Y  G R
Sbjct: 147 LNRY-LTRWAPGSVKPIYKKGPR 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,004,107
Number of Sequences: 237096
Number of extensions: 1510503
Number of successful extensions: 3355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)