Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    29   1.4  
At3g47130.1 68416.m05117 F-box family protein-related contains w...    29   1.9  
At1g70100.3 68414.m08067 expressed protein                             28   4.4  
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR...    27   5.8  
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea...    27   5.8  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 391 TIAPPATGVEFIHTTWSHCDHLQCVSRDLFCHVPSDFEM 275
           T+  P T  E    TW   DHLQ  S ++  H  S  ++
Sbjct: 194 TVFAPLTKKEISEITWHRLDHLQPASNEVITHGVSGLKL 232


>At3g47130.1 68416.m05117 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain;
          Length = 360

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +2

Query: 59  CLTIIIIPHINFF-------LLPL*ADEHTANLIVSDYRRPWTSAMPRSESNCCLP 205
           C   I IPH+N         LL    D H   L++     P+ S+   S S+CC+P
Sbjct: 53  CEVFIEIPHLNITSSSAPPRLLIAFQDFHGKKLMLVSSPNPYVSSSSSSSSSCCVP 108


>At1g70100.3 68414.m08067 expressed protein
          Length = 504

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 258 HRGRELISKSDGT*QKRSLETHCRWSQWLQVVWMNSTPVAGGAMVKTRR 404
           HR   ++SKS+GT +K+  +     ++ ++ + + + P A  + VKTRR
Sbjct: 434 HRSSSVVSKSNGTAEKQK-DPSRLGTRAVERIHLQAKPKAEASNVKTRR 481


>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -3

Query: 138 IKLAVCSSAYKGNKKKLMCGIIMIVKQYLKALLHITIKKNYD 13
           + L++C    KG     M  +++ +K++L   + + +K +YD
Sbjct: 357 LALSICGKNLKGKTPLDMKSVVLELKRHLSDKIFVKLKSSYD 398


>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 558

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 388 W*KREDGIISNNSSEHSPTIALR*TKLT*SFRECFSLLIVEGNT 519
           W +  +     NSSE +PT AL  T  T   +   S  I+ G+T
Sbjct: 512 WTRPSESETQTNSSEANPTTALLSTSFTKDNKASLSSKIISGST 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,286
Number of Sequences: 28952
Number of extensions: 228274
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)