Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS309F06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 190 4e-49
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 190 6e-49
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 42 2e-04
At5g01850.1 68418.m00104 protein kinase, putative similar to pro... 30 0.82
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 29 2.5
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 28 3.3
At1g43730.1 68414.m05028 hypothetical protein 28 3.3
At5g41310.1 68418.m05020 kinesin motor protein-related 27 5.8
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 5.8
At5g28615.1 68418.m03493 hypothetical protein 27 5.8
At2g26860.2 68415.m03223 F-box family protein contains F-box dom... 27 7.7
At1g60720.1 68414.m06835 hypothetical protein 27 7.7
At1g56020.1 68414.m06431 expressed protein 27 7.7
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 190 bits (464), Expect = 4e-49
Identities = 88/119 (73%), Positives = 106/119 (89%)
Frame = -2
Query: 436 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 257
L+EK+P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64 LDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123
Query: 256 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 80
IHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 124 IHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 190 bits (462), Expect = 6e-49
Identities = 88/115 (76%), Positives = 103/115 (89%)
Frame = -2
Query: 436 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 257
L+EK P+R+FEG ALLRR+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKS
Sbjct: 64 LDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKS 123
Query: 256 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 92
IHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 124 IHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = -2
Query: 436 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 257
++ DP R+ + LL +L +GV+ ++ L L + F RRL T + A+
Sbjct: 63 MDPADPFRIQMTDMLLEKLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEH 121
Query: 256 IHHARILIRQRHIRVRKQVVNIPSFIV 176
A I Q H+RV + + P+F+V
Sbjct: 122 HKEAVTYIEQGHVRVGPETITDPAFLV 148
>At5g01850.1 68418.m00104 protein kinase, putative similar to
protein kinase [Arabidopsis thaliana]
gi|1054633|emb|CAA63387; contains protein kinase domain,
Pfam:PF00069
Length = 333
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 119 TSTEWRFQREVNVLARVQAHN 181
+S E RF REVN+++RVQ HN
Sbjct: 57 SSLESRFVREVNMMSRVQHHN 77
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +1
Query: 283 PASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTIS------WGPSPRGGA 444
P++ P SP ++ SS P Y P G Y S + P P+ G
Sbjct: 51 PSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYYYPPPKSGG 110
Query: 445 RYPIRPIVSRITIHWPSFY 501
YP P + I ++P +Y
Sbjct: 111 NYPYTPPPNPIVPYFPFYY 129
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 353 TDETRLCAWSED*GLLGASSADAGVQSW 270
T E CAWS LL + S DA + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 235 SKFWHDGWTSPGQL 276
+KFWHD WT G L
Sbjct: 77 AKFWHDNWTGHGPL 90
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 291 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 184
RRR S A S + F G F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 385 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 284
RL + VLDE++ +D LG+K ER++ T+
Sbjct: 473 RLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506
>At5g28615.1 68418.m03493 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 235 SKFWHDGWTSPGQL 276
+KFWHD WT G L
Sbjct: 9 AKFWHDDWTGLGPL 22
>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = -2
Query: 430 EKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 251
E+D +RLFE ++RL +LD + + Y G+ L +++ +K +
Sbjct: 260 EQDVERLFESITSVKRLSLFVLLDIEDESM-YHNGIYFNQL--EHLNLHIYRDNWSKLL- 315
Query: 250 HARILIRQRHIRVRKQVVNIPSFIVRL 170
R+L +RV K VV++ FI L
Sbjct: 316 -VRLLEDSPKLRVLKIVVDVSFFIGNL 341
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 241 FWHDGWTSPGQL 276
FWHD WTS G L
Sbjct: 25 FWHDSWTSLGPL 36
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 205 ACGHEYAFAGSKFWHDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 378
AC + KF GWTSP + DD RS Q + + + PV+ +E
Sbjct: 4 ACVKSAGVSPEKFSSYGWTSPRM---SLTRDDNRRSSSVDKQQSDPLPEIQDPVVDFE 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,720
Number of Sequences: 28952
Number of extensions: 248078
Number of successful extensions: 721
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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