Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   5.2  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   9.0  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   9.0  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 520 RVXXGGGSPFXVVSRIHYMSQIKFHQVPPTTAPPL 416
           RV    G P   ++R HY +++  H   P T P L
Sbjct: 443 RVEKSTGQPSTPLNRQHYFNELP-HSTTPVTLPSL 476


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 319 LLLYYLRYCSVYIWLSTIILPFL 387
           L++YY+ Y   Y+ + +I+ PFL
Sbjct: 166 LVVYYVDYGVTYVSVPSIVRPFL 188


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 446 PSATHDCPTLGTRARDCSGIKKGRMMVLNHIYTEQYRK*YNNNLF*NIKFHL 291
           P     C T   R   CS    GR + L+ +  E YRK + N L+   KF L
Sbjct: 701 PKGIPQCGTDALRFTLCSLTTGGRDLNLDILRVEGYRK-FCNKLYNATKFAL 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,002
Number of Sequences: 5004
Number of extensions: 33894
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)