Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845     30   1.3  
03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870     30   1.3  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    28   4.0  
02_05_0522 - 29744368-29745534                                         27   6.9  

>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
          Length = 439

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 396 AVTRSRSKGGAVVGGTWWNLICD 464
           A+  S S+GG +VGG +W L+ D
Sbjct: 318 AIYASASRGGPLVGGAFWQLLLD 340


>03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870
          Length = 468

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 396 AVTRSRSKGGAVVGGTWWNLICD 464
           A+  S S+GG +VGG +W L+ D
Sbjct: 347 AIYASASRGGPLVGGAFWQLLLD 369


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 HHPALFNPGAVTRSRSKGGAVVGG 440
           HH   + PG V R+ S G  V+GG
Sbjct: 82  HHQGAYQPGGVYRAPSPGVPVIGG 105


>02_05_0522 - 29744368-29745534
          Length = 388

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 475 IHYMSQIKFHQVPPTTAPPLERERVTAPGLKRAG*WYSTIYIPNNTASNIITIYFKI 305
           + Y S    H+   +    LER+ V  P  K A  WY T Y+ +N    ++ I+ ++
Sbjct: 139 VPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAMAWY-TPYVYHNPIGRLVHIFVQL 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,683
Number of Sequences: 37544
Number of extensions: 224981
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)