Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27245| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)                   27   7.1  

>SB_27245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 KLLLYYLRYCSVYI-WLSTIILPFLIPEQSRALVP 417
           + LLY+LRYC +   W S+ ++  L+ E SR + P
Sbjct: 126 RALLYFLRYCLLDTHWNSSDLIAPLVQEASRLMAP 160


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 471  ITCH--KLNSTKCHPRLPHPWNESA*LLRD*KGQDDGTQPYIYRTIP 337
            +T H  K+N+TK   R  HPW+ +  LL   +  D     YI  T P
Sbjct: 1134 LTTHAAKMNNTKNRYRDIHPWDHTRVLLTTKENGDYINASYIKETTP 1180


>SB_27113| Best HMM Match : Str_synth (HMM E-Value=0)
          Length = 607

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 358 WLSTIILPFLIPEQSRALVPRVG 426
           WL +++  F+ PE   AL PR G
Sbjct: 299 WLRSLLAKFVTPEMLHALAPRYG 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,711
Number of Sequences: 59808
Number of extensions: 255550
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)