Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.7  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 375 PALFNPGAVTRSRSKGGAVVGGTWWNLI 458
           P LF PG    +    G +VG + +  +
Sbjct: 48  PVLFPPGPPPNNEDSSGVIVGASGYGFV 75


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 293 DGTLYFKINCYYITCGIVRYIY 358
           D  +Y  ++ +YI C I+ ++Y
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLY 363


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 463 SQIKFHQVPPTTAPPLER 410
           +Q    Q+PPT  P +ER
Sbjct: 730 TQPTMSQMPPTAQPRMER 747


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,836
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)