Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    28   0.97 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.7  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   9.0  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    25   9.0  

>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +3

Query: 228 FKLVDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKK 404
           F+    +EG + D  +K PP      ++ +++WH     Y   P++E       +  KK
Sbjct: 210 FRARGFVEGELADPDDKLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKK 268


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 482  YWGSFNHPSNLSFIYYCRDMKTYKTNFFCILKFYT 378
            +W S     N S +Y+ R +  Y ++ F   +FYT
Sbjct: 1002 FWTSLGFAINNSLLYFVRALLFYCSSIFISKEFYT 1036


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 473 SFNHPSNLSFIYYCRDMKTYKTNFFCILKF 384
           +F   S   F+YYC+    + +  F I+KF
Sbjct: 67  TFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 222 PQYKADIVPDGVEILNKRLYVVLLIME 142
           P  K D+V D  E+L K L+ VLL  E
Sbjct: 69  PDEKPDLVDDSDEVLLKSLHNVLLETE 95


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 201 LYQLYIGDVFKLVDILEGNV-VDYYNKDPPTSF 296
           L+Q+ I D F   D+  GNV V +Y   P T F
Sbjct: 424 LFQMLIVDNFTHADLHPGNVLVKFYKGIPKTIF 456


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -3

Query: 492 YLGILGVFQSPI*PQLHLLL*GYENLQ----NQFFLHFEVLYIAWVQC*DTDHIEIFHCA 325
           Y+ ILG+F +PI   L+ LL  ++NL        FL F +LY  +     T  + +F+  
Sbjct: 95  YMFILGMFVTPIFSFLYSLL--FKNLDYIQPGPTFLIFAILYQYYYIVPSTVFVRLFNIK 152

Query: 324 MISK 313
              K
Sbjct: 153 FTDK 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,568
Number of Sequences: 5004
Number of extensions: 51131
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)