Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    27   8.1  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   8.1  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
           protein T24C4.8 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 303 FKDFWISWHSGKFQYGL 353
           F   WISW  GKF YG+
Sbjct: 23  FTKLWISWSIGKFSYGI 39


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 210 LYIGDVFKLVDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQ 344
           +++   + L DIL+ NV+DY+  D  + + E+  F I + +GK +
Sbjct: 203 VHVDIYYFLKDILDKNVIDYFWMD--SEYAEYGTFDIFYENGKLE 245


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 237 VDILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQY 347
           +D   G +   +NK+  + F+E KD W S  S  F Y
Sbjct: 102 IDHFTGLMHTPWNKEEESQFVEMKDAWKSDSSRHFFY 138


>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 306 KDFWISWHSGKFQYGLCPNIEPM 374
           K  W+ WH GK  YG  P  + M
Sbjct: 353 KSVWLHWHDGKI-YGFSPENDEM 374


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 258 VVDYYNKD--PPTSFIEFKDFWI 320
           ++++Y  D  PP SF+ F+ FW+
Sbjct: 91  ILNFYGSDCTPPNSFLTFQIFWV 113


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 385 FIHRMGSMLGHRPY*NFPLCHDIQKSLN 302
           F H    M+ H P+   P+ HDI K L+
Sbjct: 471 FAHGYKKMMSHAPFNISPIDHDIDKDLS 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,836
Number of Sequences: 27780
Number of extensions: 271657
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)