Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q74CL4 Cluster: Response regulator/GGDEF domain protein...    31   6.9  
UniRef50_Q9KWN3 Cluster: Long chain fatty acid CoA ligase; n=3; ...    31   6.9  
UniRef50_Q9CJL6 Cluster: Putative uncharacterized protein PM1983...    30   9.2  
UniRef50_A6BDF7 Cluster: Putative uncharacterized protein; n=1; ...    30   9.2  

>UniRef50_Q74CL4 Cluster: Response regulator/GGDEF domain protein;
           n=7; Desulfuromonadales|Rep: Response regulator/GGDEF
           domain protein - Geobacter sulfurreducens
          Length = 458

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 5   IYLLH*NTRNTISKPINFRTVETNVS*SIEKRRKDKQNYFLKINKNCF------ARCVDL 166
           +Y L    R+ I KP N    +  V+   E+RR   +NY LK   N F      A C+DL
Sbjct: 89  VYALKNGARDYILKPFNHDEFKHTVALCFEQRRLINENYELKELLNLFQVGQNIANCIDL 148


>UniRef50_Q9KWN3 Cluster: Long chain fatty acid CoA ligase; n=3;
          Sphingopyxis|Rep: Long chain fatty acid CoA ligase -
          Sphingopyxis macrogoltabida
          Length = 556

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 85 LRNICLDGSEVNWFTNCIT 29
          L+N+C++G+EV WF N  T
Sbjct: 19 LQNVCVNGNEVKWFVNAPT 37


>UniRef50_Q9CJL6 Cluster: Putative uncharacterized protein PM1983;
           n=1; Pasteurella multocida|Rep: Putative uncharacterized
           protein PM1983 - Pasteurella multocida
          Length = 368

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -1

Query: 275 SRFVIFLVFRTTYSNFLKFXPGFN*ICGSFNTHRHKANQH---IGRNNSY*FLRNNSAYL 105
           S ++ F+        +L   P     CG + TH H  NQH   +  N    FLR + A L
Sbjct: 36  SHYISFIYKEIVMKKWLFMLPLIVIGCGVYWTHYHHDNQHTDIVSSNGRLEFLRLDVASL 95

Query: 104 YA 99
           YA
Sbjct: 96  YA 97


>UniRef50_A6BDF7 Cluster: Putative uncharacterized protein; n=1;
           Dorea longicatena DSM 13814|Rep: Putative
           uncharacterized protein - Dorea longicatena DSM 13814
          Length = 473

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -2

Query: 325 FMTGLPELLRTLLSNFIPVLLFFWCFEQLIRISLNSXPVLIKFVEAL-THIG 173
           F +G+P  ++ +  + +P++LFF  F Q++ + L    ++   V  L T+IG
Sbjct: 212 FESGIPHYMKEIGGSLLPIILFF-TFFQVVSLKLKKKTLIKNLVGILYTYIG 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,000,037
Number of Sequences: 1657284
Number of extensions: 5232412
Number of successful extensions: 11901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11898
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)