Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   1.1  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   1.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   3.3  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    25   3.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    24   5.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   5.8  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    24   5.8  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    24   5.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   7.6  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    24   7.6  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 176 RHKANQHIGRNNSY*FLRNNSAYLYAFSQSI 84
           + ++N HI RN +  F + NS Y   FS+++
Sbjct: 76  QEQSNSHISRNENELFSKENSIYNGNFSENL 106


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 313 LPELLRTLLSNFIPVLL-FFWCFEQLIRISLNSXPVL 206
           LP LLR L S+++P++L    C   +    LN  P++
Sbjct: 294 LPSLLRLLRSSYLPLILASVACIRNISIHPLNESPII 330


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 91  NRLRNICLDGSEVNWFTNCIT 29
           N L N+C+  S VN+   CI+
Sbjct: 543 NHLYNLCVKSSNVNYARECIS 563


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 161 QHIGRNNSY*FLRNNSAYLY 102
           +  GRNN+  F R NS +LY
Sbjct: 233 ERAGRNNTVPFSRTNSRFLY 252


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = -2

Query: 100 PFLNRLRNIC---LDGSEV 53
           PF++ +RNIC   LDG EV
Sbjct: 184 PFVSSIRNICIKILDGEEV 202


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 23   NTRNTISKPINFRTVETNVS 82
            N  N ISKP N  T+ T +S
Sbjct: 1369 NQNNFISKPFNVHTLSTTLS 1388


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 153 DVLICFVPMCVKASTNLIKTGXEFKEIRISCSK--HQK---NNKTGIKLDNNVLSNSGRP 317
           D L    P+   +ST  + +     E+  S S+  H K   N+ + + LD N LSNS  P
Sbjct: 397 DPLEAPTPIVASSSTIFLNSNQRNDELSASGSQEPHPKDGTNSTSSLPLDTNNLSNSEPP 456


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 IKTGXEFKEIRISCSKHQKNNKTGIKLDNNVLSNSGRP 317
           +K+  +F+ +RI+ S+ +K +   +   N  L + G P
Sbjct: 246 VKSNQQFRRVRIAYSERKKVDNVVLVFQNQRLWDYGTP 283


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 325 FMTGLPELLRTLLSNFIPVL 266
           F T LPE+ RT LSN + +L
Sbjct: 839 FETTLPEIQRTNLSNTVLIL 858


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 128 KINKNCFARCV 160
           KIN+NCF +C+
Sbjct: 40  KINENCFDKCI 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,153
Number of Sequences: 5004
Number of extensions: 22964
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)