Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813...    27   5.2  

>06_01_1036 +
           8134132-8134539,8134885-8134956,8134969-8135088,
           8135179-8135256,8135442-8135697,8136427-8136515,
           8137229-8137376,8137460-8137899,8138048-8138562,
           8138791-8139061,8139231-8139492,8139583-8139938
          Length = 1004

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 334 SSYFMTGLPELLRTLLSNFIPVLLFFW 254
           S YFM    EL R + S F+PV+   W
Sbjct: 697 SLYFMEETKELKRCVSSAFVPVMRAMW 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,279,141
Number of Sequences: 37544
Number of extensions: 113691
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)