Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   2.3  
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   4.1  
SB_43718| Best HMM Match : PAN (HMM E-Value=3.6e-06)                   27   5.4  
SB_9689| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)                   26   9.4  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               26   9.4  

>SB_33595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 201 LIKTGXEFKEIRISCSKHQKNNKTGIKLDNNVLSNS 308
           L+K   +F+E+ I  SK  +N  +G K   NV  +S
Sbjct: 439 LVKAKTKFEELAIEPSKKHRNEASGSKTTRNVSEDS 474


>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 304 LLRTLLSNFIPVLLFFWCFEQLIRISLNSXPVLIKFVE 191
           LL +L  NF  +  FFW   Q++   L+S   L +FVE
Sbjct: 782 LLNSLQKNFPDLQAFFWSDSQIVLNWLHSNKQLQQFVE 819


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 260 FLVFRTTYSNFLKFXPGFN*ICGSFNTHRHKANQHIG 150
           + VF   Y +F +F  GF   CG +  H      H G
Sbjct: 479 YKVFTRHYGHFTRFYEGFTWHCGDYTRHYGGFTWHYG 515


>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1378

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 304 LLRTLLSNFIPVLLFFWCFEQLIRISLNSXPVLIKFVE 191
           LL +L  NF  +  FFW   Q++   L+S   L +FV+
Sbjct: 869 LLNSLQKNFPDLQAFFWSDSQIVLNWLHSNKQLQQFVD 906


>SB_43718| Best HMM Match : PAN (HMM E-Value=3.6e-06)
          Length = 88

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 53  NFRTVETNVS*SIEKRRKDKQNYFLKINKNCFARCVDLLCADV 181
           N+R++      S    R+  +N     N+NC  R ++ +CAD+
Sbjct: 47  NYRSLSNTCELSSSSHRRQPENLTSCDNENCTYRAIE-VCADI 88


>SB_9689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 177 MCVKASTNLIKTGXEFKEIRISCSKHQKNNKTGIKLDNNVL 299
           MC+K  TN++  G E K IR + +K ++N K  + +  N L
Sbjct: 97  MCLKVLTNILYQGKEGK-IREAINKFRQNRKI-VDIQRNFL 135


>SB_34112| Best HMM Match : RVT_1 (HMM E-Value=0.041)
          Length = 858

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 171 VPMCVKASTNLIKTGXEFKEIRISCSKHQK 260
           VP+  K  ++L+ T    K +++  SKH+K
Sbjct: 27  VPLVEKLFSDLVHTTESLKNLKLQHSKHEK 56


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 313  LPELLRTLLSNFIPVLLFFWCFEQLIRISLNSXPV 209
            +P +L  +L+N +P+L+FF  F +    S NS  V
Sbjct: 1136 IPNVLAKMLANGLPLLVFFLKFMEWWYSSENSHTV 1170


>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 201 LIKTGXEFKEIRISCSKHQKNNKTGIK 281
           L KT  EF+E     SKH +N K GI+
Sbjct: 412 LRKTNREFEEQNAILSKHIENMKKGIE 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,112,737
Number of Sequences: 59808
Number of extensions: 157861
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)