Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    26   6.3  

>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 92  EKRRKDKQNYFLKI-NKNCFARCVDLLCADVC 184
           EK  +D  +  L +   NCF R  +L C DVC
Sbjct: 87  EKDAEDCNSVLLSLFTNNCFVRRENLRCLDVC 118


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 2   RIYLLH*-NTRNTISKPINFRTVETNVS*SIEKRRKDK 112
           R YLLH  N  N I+KP+ +R+        +E+R +D+
Sbjct: 232 RNYLLHIRNLTNDINKPLRYRSYTDQAYIFLERRVEDR 269


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 282 ILFPFCYFFGVSNNLFE 232
           ILF FC+FF ++  LFE
Sbjct: 242 ILFGFCHFFSMALKLFE 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,072,554
Number of Sequences: 27780
Number of extensions: 125590
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)