Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   7.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   7.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   7.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   7.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   9.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +3

Query: 237 ISCSKHQKNNKTGIKLDNNVL 299
           I C K++KN +T +++  + +
Sbjct: 161 IYCEKYEKNGETYLRIKKHAV 181


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 ANQHIGRNNSY*FLRNNSAY 108
           +N+ I  NN+Y +  NN+ Y
Sbjct: 86  SNRTIHNNNNYKYNYNNNNY 105


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 ANQHIGRNNSY*FLRNNSAY 108
           +N+ I  NN+Y +  NN+ Y
Sbjct: 86  SNKTIHNNNNYKYNYNNNNY 105


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 ANQHIGRNNSY*FLRNNSAY 108
           +N+ I  NN+Y +  NN+ Y
Sbjct: 86  SNKTIHNNNNYKYNYNNNNY 105


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 ANQHIGRNNSY*FLRNNSAY 108
           +N+ I  NN+Y +  NN+ Y
Sbjct: 86  SNKTIHNNNNYKYNYNNNNY 105


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 167 ANQHIGRNNSY*FLRNNSAY 108
           +N+ I  NN+Y +  NN+ Y
Sbjct: 319 SNKTIHNNNNYKYNYNNNNY 338


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 279 LFPFCYFFG 253
           +FPFC  FG
Sbjct: 211 IFPFCIVFG 219


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 313 LPELLRTLLSNFIPVLL 263
           +P+L+R +   ++P +L
Sbjct: 330 MPQLIRKIFLKYLPTIL 346


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 94  LNRLRNICLDGSEVNWFTNCI 32
           L+ LRN  +  SE    T CI
Sbjct: 162 LDALRNTSIAKSEFGGITQCI 182


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 265 LFFWCFEQLIRISLNSXPVLIKFVEALT 182
           +  W F++   IS+N   V    +EA+T
Sbjct: 113 VLLWDFQECTFISVNGKEVHSGNIEAVT 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,092
Number of Sequences: 438
Number of extensions: 1945
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)