Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F02f
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12670.1 68417.m01991 expressed protein  ; expression support...    27   2.5  
At1g51805.1 68414.m05838 leucine-rich repeat protein kinase, put...    27   3.4  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    26   5.9  
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put...    26   7.7  

>At4g12670.1 68417.m01991 expressed protein  ; expression supported
           by MPSS
          Length = 520

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 186 KASTNLIKTGXEFKEIRISCSKHQKNNKTGIKLDNNVLSNSGR 314
           KA  +    G + KE R    K+Q+N       +++VL+N GR
Sbjct: 156 KAQPHSFAVGIKTKEKRRYSEKNQQNKTVATTHEHDVLTNDGR 198


>At1g51805.1 68414.m05838 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 253 CFEQLIRISLNSXPVLIKFVEALTHIGTKQINT 155
           C  QL++ S ++ P L+  +EA T I   Q+ T
Sbjct: 323 CILQLVKTSKSTLPPLLNAIEAFTVIDFLQVET 355


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 253 CFEQLIRISLNSXPVLIKFVEALTHIGTKQINTS 152
           C+ QL++   ++ P LI  +EA + I   Q+ TS
Sbjct: 325 CYLQLVKTPNSTLPPLINAIEAYSVIEFSQLETS 358


>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 865

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 253 CFEQLIRISLNSXPVLIKFVEALTHIGTKQINTSG 149
           C  Q+++   ++ P L+  +EA T I   Q+ T+G
Sbjct: 302 CLLQVVKTLKSTLPPLLNAIEAFTVIDFPQMETNG 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,416,322
Number of Sequences: 28952
Number of extensions: 108263
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)