Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0170 + 27178952-27179572,27181631-27181816,27182245-271822...    30   0.98 
01_06_0257 + 27932119-27932187,27932371-27932470,27932560-279326...    29   3.0  
07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644...    28   4.0  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    27   6.9  

>01_06_0170 +
           27178952-27179572,27181631-27181816,27182245-27182274,
           27183323-27183518,27183623-27183714,27183753-27183773,
           27184216-27184248
          Length = 392

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 342 IPISYSNPNQTS*P*AEFPKPIFIAFRISPLSASISQANSPPS 214
           +P++  +P  TS P    PKP  ++F + P SAS+S + S P+
Sbjct: 10  LPLAGLSPATTSFP-GSTPKPGSLSFALRPPSASLSSSASAPA 51


>01_06_0257 +
           27932119-27932187,27932371-27932470,27932560-27932666,
           27933619-27933621,27933833-27933866,27934081-27934229,
           27934676-27934822,27935019-27935129,27935548-27935647,
           27936115-27936165,27937297-27937334,27937448-27937540,
           27937744-27937827,27939101-27939262
          Length = 415

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 5   VANGPVKGTWQDGVVDYREIVNGITSGTWQYFYDKV 112
           + +G +   W+D  +D   I++G  +G  QYF  +V
Sbjct: 345 IVHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV 380


>07_03_0056 -
           12863599-12863715,12864107-12864235,12864322-12864408,
           12864657-12864848,12864930-12865106,12865174-12865420,
           12865510-12865619,12865751-12865851,12865937-12866000,
           12866433-12866522,12866621-12866719,12866817-12866897,
           12867197-12867535
          Length = 610

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 5   VANGPVKGTWQDGVVDYREIVNGITSGTWQYFYDKVAQAPYVWNPTTGDLVTYD-DARSV 181
           +A+GP KG   DG++  + +  GI +G             Y WNP T   ++   DA +V
Sbjct: 329 LASGPDKGVELDGILRTKPLETGIVNG----------MDVYEWNPATDQYISVKYDATTV 378

Query: 182 IE 187
            E
Sbjct: 379 TE 380


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 23  KGTWQDGVVDYREIVNGITSGTWQYFYDKVA 115
           KG W+DG V Y  ++  I     Q F++K +
Sbjct: 13  KGAWRDGAVTYLHLLFYIAISGGQIFFNKAS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,625
Number of Sequences: 37544
Number of extensions: 241048
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)