Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS309F01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)            29   3.1  
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)              27   9.4  
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 104 DKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 253
           D V  +PY  +      V YDD  SV EK  Y++   L G   W +D D+
Sbjct: 309 DPVLVSPYGVD-VNNQWVGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDD 357


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 104 DKVAQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADN 253
           D  A+APY ++ +    + YDD  S+  K + ++   L G   W ID D+
Sbjct: 685 DNPAKAPYGYHGS--QWIAYDDVTSLGRKVELIKKENLLGAMFWAIDLDD 732


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
 Frame = +2

Query: 113 AQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNGDILNAMNMGLGN 292
           A+   ++ P + D     D R    KG Y      G +F W ++  N  I   M  G G 
Sbjct: 335 ARGEMIFTPVSKDKAK--DIRDAFCKGIY------GRVFVWIVNKINKAIYKPMKPGAGQ 386

Query: 293 SA*G*LV*FGFE--*LIGIKKLC-DFHHFTV*AFFFLYLHDLFSERF 424
           ++ G L  FGFE   +   ++LC ++ +  +  FF  ++  L  E++
Sbjct: 387 TSIGVLDIFGFENFDINSFEQLCINYANEHLQQFFVKHIFKLEQEQY 433


>SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 86  TWQYFYDKV---AQAPYVWNPTTGDLVTYDDARSVIEKGKYVRNNKLGGLFAWEIDADNG 256
           +W  ++D V   A+ P  +   T  L   D     +  G+Y    K G +++   DAD+G
Sbjct: 101 SWTSYFDFVVVDARKPLFFGEGTA-LRQVDVETGTLSIGRYAGALKKGHIYSGGCDADDG 159

Query: 257 DILNA 271
           D+L A
Sbjct: 160 DMLRA 164


>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
          Length = 977

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 282 PIFIAFRISPLSASISQANSPPS---LLFLTYFPFSITDLASS*VTR 151
           P  +AFR S +SASI+ A   P    +L L   P+SI +  S  + R
Sbjct: 642 PDVVAFRFSLVSASIAMAALVPRFTYMLALGGLPYSIVEKGSESIPR 688


>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 170 ARSVIEKGKYVRNNKLGGLFAWEIDADNGDILNAMNMG 283
           AR +IEK KY RNN    + + ++  +N    N  N+G
Sbjct: 146 ARKLIEKTKYKRNNSTKKI-SKDLQQNNISFCNTTNLG 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,713
Number of Sequences: 59808
Number of extensions: 288077
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)